Coarse-grained simulation reveals key features of HIV-1 capsid self-assembly (Q30276819)

17 August 2017

Coarse-grained simulation reveals key features of HIV-1 capsid self-assembly (English)

1 reference

17 August 2017

1 reference

James F Dama

2

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Gregory A. Voth

7

object named as

Gregory A Voth

1 reference

17 August 2017

John M A Grime

1

1 reference

17 August 2017

Barbie K Ganser-Pornillos

3

1 reference

17 August 2017

Cora L Woodward

4

1 reference

17 August 2017

Grant J Jensen

5

1 reference

17 August 2017

Mark Yeager

6

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17 August 2017

language of work or name

English

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publication date

13 May 2016

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17 August 2017

Nature Communications

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17 August 2017

7

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17 August 2017

11568

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Creative Commons Attribution 4.0 International

17 August 2017

start time

13 May 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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RNA and Nucleocapsid Are Dispensable for Mature HIV-1 Capsid Assembly

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Electron cryotomography studies of maturing HIV-1 particles reveal the assembly pathway of the viral core

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Applying molecular crowding models to simulations of virus capsid assembly in vitro

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Structure and Dynamics of Full-Length HIV-1 Capsid Protein in Solution

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Mature HIV-1 capsid structure by cryo-electron microscopy and all-atom molecular dynamics

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The NTD-CTD intersubunit interface plays a critical role in assembly and stabilization of the HIV-1 capsid

3 June 2018

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Coarse-graining methods for computational biology

3 June 2018

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Association equilibrium of the HIV-1 capsid protein in a crowded medium reveals that hexamerization during capsid assembly requires a functional C-domain dimerization interface

3 June 2018

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Early stages of the HIV-1 capsid protein lattice formation

3 June 2018

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Unclosed HIV-1 capsids suggest a curled sheet model of assembly

3 June 2018

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HIV-1 assembly, budding, and maturation

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The molecular architecture of HIV.

3 June 2018

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Contribution of E3-ubiquitin ligase activity to HIV-1 restriction by TRIM5alpha(rh): structure of the RING domain of TRIM5alpha

3 June 2018

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Simulated self-assembly of the HIV-1 capsid: protein shape and native contacts are sufficient for two-dimensional lattice formation

3 June 2018

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Rhesus TRIM5α disrupts the HIV-1 capsid at the inter-hexamer interfaces

3 June 2018

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Atomic-level modelling of the HIV capsid

3 June 2018

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Hexagonal assembly of a restricting TRIM5alpha protein

3 June 2018

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Cryo electron tomography of native HIV-1 budding sites

3 June 2018

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Disulfide bond stabilization of the hexameric capsomer of human immunodeficiency virus

3 June 2018

1 reference

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Anti-retroviral activity of TRIM5 alpha

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4869257

Structural Convergence between Cryo-EM and NMR Reveals Intersubunit Interactions Critical for HIV-1 Capsid Function

3 June 2018

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X-ray structures of the hexameric building block of the HIV capsid

3 June 2018

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Invariant polymorphism in virus capsid assembly

3 June 2018

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Three-dimensional analysis of budding sites and released virus suggests a revised model for HIV-1 morphogenesis

3 June 2018

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Biochemical characterization of a recombinant TRIM5alpha protein that restricts human immunodeficiency virus type 1 replication.

3 June 2018

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The structural biology of HIV assembly

3 June 2018

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Cellular proteins detected in HIV-1.

3 June 2018

1 reference

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Structure of full-length HIV-1 CA: a model for the mature capsid lattice

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4869257

Comparative requirements for the restriction of retrovirus infection by TRIM5alpha and TRIMCyp

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4869257

Modulation of retroviral restriction and proteasome inhibitor-resistant turnover by changes in the TRIM5alpha B-box 2 domain

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4869257

Intracellular water-specific MR of microbead-adherent cells: the HeLa cell intracellular water exchange lifetime

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4869257

Electron cryotomography of immature HIV-1 virions reveals the structure of the CA and SP1 Gag shells

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4869257

Dynamic pathways for viral capsid assembly

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4869257

Specific recognition and accelerated uncoating of retroviral capsids by the TRIM5alpha restriction factor

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4869257

The Mechanism of HIV-1 Core Assembly: Insights from Three-Dimensional Reconstructions of Authentic Virions

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4869257

Effect of macromolecular crowding agents on human immunodeficiency virus type 1 capsid protein assembly in vitro.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4869257

Influence of macromolecular crowding upon the stability and state of association of proteins: predictions and observations

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4869257

The cytoplasmic body component TRIM5alpha restricts HIV-1 infection in Old World monkeys

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4869257

Assembly properties of the human immunodeficiency virus type 1 CA protein

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4869257

Functional Surfaces of the Human Immunodeficiency Virus Type 1 Capsid Protein

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4869257

Structural organization of authentic, mature HIV-1 virions and cores

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4869257

Formation of a human immunodeficiency virus type 1 core of optimal stability is crucial for viral replication

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4869257

Human immunodeficiency virus type 1 N-terminal capsid mutants that exhibit aberrant core morphology and are blocked in initiation of reverse transcription in infected cells

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4869257

Image reconstructions of helical assemblies of the HIV-1 CA protein

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4869257

In vitro assembly properties of wild-type and cyclophilin-binding defective human immunodeficiency virus capsid proteins in the presence and absence of cyclophilin A.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4869257

Cytoskeletal proteins inside human immunodeficiency virus type 1 virions

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4869257

VMD: visual molecular dynamics

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4869257

Role of the major homology region of human immunodeficiency virus type 1 in virion morphogenesis.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4869257

Functional domains of the capsid protein of human immunodeficiency virus type 1

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4869257

The p2 domain of human immunodeficiency virus type 1 Gag regulates sequential proteolytic processing and is required to produce fully infectious virions.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4869257

Assembly of recombinant human immunodeficiency virus type 1 capsid protein in vitro

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4869257

Assembly and analysis of conical models for the HIV-1 core.

3 June 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS11568

Modelling the self-assembly of virus capsids.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS11568

Three-dimensional structure of HIV-1 virus-like particles by electron cryotomography.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS11568

Deciphering the kinetic mechanism of spontaneous self-assembly of icosahedral capsids

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS11568

In vitro papillomavirus capsid assembly analyzed by light scattering

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS11568

A trimer of dimers is the basic building block for human immunodeficiency virus-1 capsid assembly

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS11568

Rapid turnover and polyubiquitylation of the retroviral restriction factor TRIM5.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS11568

The contribution of RING and B-box 2 domains to retroviral restriction mediated by monkey TRIM5alpha

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS11568

Nonequilibirum assembly, retroviruses, and conical structures

21 January 2018

1 reference

12 December 2020

Reversible self-assembly of patchy particles into monodisperse icosahedral clusters

1 reference

12 December 2020

Monodisperse self-assembly in a model with protein-like interactions

1 reference

12 December 2020

Role of reversibility in viral capsid growth: a paradigm for self-assembly

1 reference

12 December 2020

Identifiers

DOI

10.1038/NCOMMS11568

1 reference

Dimensions Publication ID

17 August 2017

0 references

0 references

1 reference

17 August 2017

PubMed publication ID

27174390

1 reference