Cloud prediction of protein structure and function with PredictProtein for Debian. (Q30353096)

12 October 2017

Cloud prediction of protein structure and function with PredictProtein for Debian. (English)

1 reference

protein function prediction

12 October 2017

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protein structure prediction

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13

Burkhard Rost

1 reference

12 October 2017

3

Esmeralda Vicedo

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Guy Yachdav

2

object named as

Guy Yachdav

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Christian Mertes

object named as

Christian Mertes

10

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Martin Steinegger

object named as

Martin Steinegger

4

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author name string

László Kaján

1

1 reference

12 October 2017

Guy Yachdav

2

1 reference

12 October 2017

Esmeralda Vicedo

3

1 reference

12 October 2017

Milot Mirdita

5

1 reference

12 October 2017

Christof Angermüller

6

1 reference

12 October 2017

Ariane Böhm

7

1 reference

12 October 2017

Simon Domke

8

1 reference

12 October 2017

Julia Ertl

9

1 reference

12 October 2017

Eva Reisinger

11

1 reference

12 October 2017

Cedric Staniewski

12

1 reference

12 October 2017

language of work or name

English

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publication date

18 July 2013

1 reference

BioMed Research International

12 October 2017

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12 October 2017

2013

1 reference

12 October 2017

398968

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Creative Commons Attribution 3.0 Unported

12 October 2017

start time

1 January 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

cites work

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1 reference

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Harnessing cloud computing with Galaxy Cloud

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3732596

Accelerated Profile HMM Searches

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3732596

Resources and costs for microbial sequence analysis evaluated using virtual machines and cloud computing

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3732596

Biomedical cloud computing with Amazon Web Services

3 June 2018

1 reference

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CloVR: a virtual machine for automated and portable sequence analysis from the desktop using cloud computing

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3732596

Protein disorder--a breakthrough invention of evolution?

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3732596

UniProt Knowledgebase: a hub of integrated protein data

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3732596

ISCB public policy statement on open access to scientific and technical research literature

3 June 2018

1 reference

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Cost-effective cloud computing: a case study using the comparative genomics tool, roundup

3 June 2018

1 reference

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Community-driven computational biology with Debian Linux

3 June 2018

1 reference

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Galaxy CloudMan: delivering cloud compute clusters

3 June 2018

1 reference

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Translational bioinformatics in the cloud: an affordable alternative

3 June 2018

1 reference

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The case for cloud computing in genome informatics

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3732596

The Pfam protein families database

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3732596

New in protein structure and function annotation: hotspots, single nucleotide polymorphisms and the 'Deep Web'.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3732596

Natively unstructured loops differ from other loops

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3732596

SNAP: predict effect of non-synonymous polymorphisms on function

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3732596

ISIS: interaction sites identified from sequence.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3732596

PROFtmb: a web server for predicting bacterial transmembrane beta barrel proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3732596

DISULFIND: a disulfide bonding state and cysteine connectivity prediction server

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3732596

Reproducible research: a bioinformatics case study

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3732596

The PredictProtein server

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3732596

NORSp: Predictions of long regions without regular secondary structure

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3732596

The PredictProtein server.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3732596

Finding nuclear localization signals

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3732596

Prediction and analysis of coiled-coil structures

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3732596

Improved prediction of protein secondary structure by use of sequence profiles and neural networks

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3732596

Combining evolutionary information and neural networks to predict protein secondary structure

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3732596

Conservation and prediction of solvent accessibility in protein families

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3732596

Transmembrane helices predicted at 95% accuracy

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3732596

Basic local alignment search tool

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3732596

Swiss-Prot: juggling between evolution and stability

3 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1155%2F2013%2F398968

Open software for biologists: from famine to feast

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23971032

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

PROFbval: predict flexible and rigid residues in proteins

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23971032

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1155/2013/398968

1 reference

12 October 2017

1 reference

12 October 2017

PubMed publication ID

23971032

1 reference