A unified phylogeny-based nomenclature for histone variants (Q30426389)

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2 February 2020

title

A unified phylogeny-based nomenclature for histone variants (English)

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27

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Frédéric Berger

5

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Prem L. Bhalla

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George A.M. Cross

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José M Eirín-López

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Kinga Kamieniarz-Gdula

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David Landsman

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Jan Postberg

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Mohan B. Singh

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Jakob H. Waterborg

38

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Maria-Elena Torres-Padilla

2 February 2020

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Maria-Elena Torres-Padilla

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Brian P Chadwick

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Andreas G Ladurner

23

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David John Tremethick

36

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Stefan Dimitrov

Stefan I Dimitrov

13

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Martin A. Gorovsky

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Martin A Gorovsky

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William F Marzluff

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Geneviève Almouzni

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Steven Henikoff

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Paul B Talbert

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Kami Ahmad

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author name string

Juan Ausió

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William M Bonner

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W Zacheus Cande

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Simon W L Chan

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Detlef Doenecke

14

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Steven E Jacobsen

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John A Latham

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31

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Eric Thompson

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Bing Zhu

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12

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publication date

21 June 2012

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2 February 2020

published in

Epigenetics & Chromatin

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2 February 2020

volume

5

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2 February 2020

page(s)

7

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The nonhistone, N-terminal tail of an essential, chimeric H2A variant regulates mitotic H3-S10 dephosphorylation

2 February 2020

cites work

1 reference

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A unique H2A histone variant occupies the transcriptional start site of active genes.

20 June 2018

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Genome-wide measurement of histone H3 replacement dynamics in yeast

20 June 2018

1 reference

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Histone variant innovation in a rapidly evolving chordate lineage

20 June 2018

1 reference

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H3.5 is a novel hominid-specific histone H3 variant that is specifically expressed in the seminiferous tubules of human testes

20 June 2018

1 reference

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Identification and characterization of two novel primate-specific histone H3 variants, H3.X and H3.Y.

20 June 2018

1 reference

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The evolutionary history of histone H3 suggests a deep eukaryotic root of chromatin modifying mechanisms

20 June 2018

1 reference

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Histone variants--ancient wrap artists of the epigenome

20 June 2018

1 reference

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H2A.Bbd: an X-chromosome-encoded histone involved in mammalian spermiogenesis

20 June 2018

1 reference

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Characterization of the histone H2A.Z-1 and H2A.Z-2 isoforms in vertebrates

20 June 2018

1 reference

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Histone genes of the razor clam Solen marginatus unveil new aspects of linker histone evolution in protostomes.

20 June 2018

1 reference

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Toxoplasma H2A variants reveal novel insights into nucleosome composition and functions for this histone family

20 June 2018

1 reference

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Functional polymorphism in H2BFWT-5'UTR is associated with susceptibility to male infertility.

20 June 2018

1 reference

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The incorporation of the novel histone variant H2AL2 confers unusual structural and functional properties of the nucleosome

20 June 2018

1 reference

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Four histone variants mark the boundaries of polycistronic transcription units in Trypanosoma brucei

20 June 2018

1 reference

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Two novel mouse genes mapped to chromosome Yp are expressed specifically in spermatids.

20 June 2018

1 reference

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Phylogenomics of unusual histone H2A Variants in Bdelloid rotifers

20 June 2018

1 reference

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The evolutionary differentiation of two histone H2A.Z variants in chordates (H2A.Z-1 and H2A.Z-2) is mediated by a stepwise mutation process that affects three amino acid residues

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3380720

Histone H1 and its isoforms: contribution to chromatin structure and function

20 June 2018

1 reference

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Early evolution of histone genes: prevalence of an 'orphon' H1 lineage in protostomes and birth-and-death process in the H2A family.

20 June 2018

1 reference

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The histone H1 family: specific members, specific functions?

20 June 2018

1 reference

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Dendroscope: An interactive viewer for large phylogenetic trees

20 June 2018

1 reference

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Pericentric heterochromatin reprogramming by new histone variants during mouse spermiogenesis.

20 June 2018

1 reference

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The sea urchin histone gene complement

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3380720

Phylogenetic analysis of fungal centromere H3 proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3380720

Deposition and function of histone H3 variants in Tetrahymena thermophila

20 June 2018

1 reference

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The NH2 tail of the novel histone variant H2BFWT exhibits properties distinct from conventional H2B with respect to the assembly of mitotic chromosomes

20 June 2018

1 reference

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Concerted and birth-and-death evolution of multigene families

20 June 2018

1 reference

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Analysis of the histone H3 gene family in Arabidopsis and identification of the male-gamete-specific variant AtMGH3.

20 June 2018

1 reference

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Nucleosomes containing the histone variant H2A.Bbd organize only 118 base pairs of DNA

20 June 2018

1 reference

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Phylogenomics of the nucleosome

20 June 2018

1 reference

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The human and mouse replication-dependent histone genes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3380720

Human testis/sperm-specific histone H2B (hTSH2B). Molecular cloning and characterization

20 June 2018

1 reference

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Dynamics of histone acetylation in vivo. A function for acetylation turnover?

20 June 2018

1 reference

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The major subacrosomal occupant of bull spermatozoa is a novel histone H2B variant associated with the forming acrosome during spermiogenesis

20 June 2018

1 reference

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Histone H1 diversity: bridging regulatory signals to linker histone function

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3380720

A novel chromatin protein, distantly related to histone H2A, is largely excluded from the inactive X chromosome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3380720

MACROH2A2, a new member of the MARCOH2A core histone family

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3380720

A mammalian oocyte-specific linker histone gene H1oo: homology with the genes for the oocyte-specific cleavage stage histone (cs-H1) of sea urchin and the B4/H1M histone of the frog

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3380720

Origin of H1 linker histones

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3380720

Several highly divergent histone H3 genes are present in the hypotrichous ciliate Stylonychia lemnae

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3380720

Male gametic cell-specific expression of H2A and H3 histone genes

20 June 2018

1 reference

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Developmental and tissue expression patterns of histone macroH2A1 subtypes

20 June 2018

1 reference

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Human histone gene organization: nonregular arrangement within a large cluster

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3380720

The evolution of the differentiation-specific histone H1 gene basal promoter

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3380720

Testis-specific expression of a novel human H3 histone gene

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3380720

A solitary human H3 histone gene on chromosome 1

20 June 2018

1 reference

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All known human H1 histone genes except the H1(0) gene are clustered on chromosome 6

20 June 2018

1 reference

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Independent evolutionary origin of histone H3.3-like variants of animals and Tetrahymena

20 June 2018

1 reference

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A proposal for a coherent mammalian histone H1 nomenclature correlated with amino acid sequences.

20 June 2018

1 reference

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A mutation in CSE4, an essential gene encoding a novel chromatin-associated protein in yeast, causes chromosome nondisjunction and cell cycle arrest at mitosis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3380720

Structure and expression of histone H3.3 genes in Drosophila melanogaster and Drosophila hydei

20 June 2018

1 reference

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Meiotic synthesis of testis histones in the rat.

20 June 2018

1 reference

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A structural comparison of different lysine-rich histones of calf thymus

20 June 2018

1 reference

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The Resolution of Four Lysine-rich Histones Derived from Calf Thymus

20 June 2018

1 reference

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Histones of Drosophila embryos. Electrophoretic isolation and structural studies.

20 June 2018

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A histone H1 protein in sea urchins is encoded by a poly(A)+ mRNA.

20 June 2018

1 reference

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Human spleen histone H1. Isolation and amino acid sequences of three minor variants, H1a, H1c, and H1d

20 June 2018

1 reference

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Extended C-terminal tail of wheat histone H2A interacts with DNA of the "linker" region.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3380720

Isolation and characterization of two human H1 histone genes within clusters of core histone genes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3380720

Genes encoding a histone H3.3-like variant in Arabidopsis contain intervening sequences

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3380720

MacroH2A, a core histone containing a large nonhistone region

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3380720

A histone variant, H2AvD, is essential in Drosophila melanogaster

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3380720

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3380720

Studies of human histone messenger RNA. II. The resolution of fractions containing individual human histone messenger RNA species

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3380720

H1 histone subfractions of mammalian testes. 1. Organ specificity in the rat

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3380720

Involvement of classical bipartite/karyopherin nuclear import pathway components in acrosomal trafficking and assembly during bovine and murid spermiogenesis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3380720

Evolution of histone H3: emergence of variants and conservation of post-translational modification sites.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3380720

The cenH3 histone variant defines centromeres in Giardia intestinalis.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3380720

Histone H3 variants in male gametic cells of lily and H3 methylation in mature pollen

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3380720

The malaria parasite Plasmodium falciparum histones: organization, expression, and acetylation

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3380720

Reading signals on the nucleosome with a new nomenclature for modified histones

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3380720

Histone H3 and H3.3 Variants in the Protozoan PathogensPlasmodium falciparumandToxoplasma gondii

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3380720

Molecular and evolutionary analysis of mussel histone genes (Mytilus spp.): possible evidence of an "orphon origin" for H1 histone genes

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3380720

Centromeric localization and adaptive evolution of an Arabidopsis histone H3 variant

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3380720

Histone H2A.Z is widely but nonrandomly distributed in chromosomes of Drosophila melanogaster

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3380720

A development-specific histone H3 localizes to the developing macronucleus of Euplotes.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3380720

Characterization of the two H1(zero)-encoding genes from Xenopus laevis.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3380720

Fractionation of human H1 subtypes and characterization of a subtype-specific antibody exhibiting non-uniform nuclear staining

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3380720

Partial amino acid sequence of two new arginine-serine rich histones from male gonads of the sea urchin (Parechinus angulosus).

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3380720

Histone H2AZ dimerizes with a novel variant H2B and is enriched at repetitive DNA in Trypanosoma brucei

26 November 2018

1 reference

12 December 2020

The alterations in H1 histone complement during mouse spermatogenesis and their significance for H1 subtype function

1 reference

12 December 2020

Non-allelic variants of histones 2a, 2b and 3 in mammals

1 reference

12 December 2020

Identification of a family of human centromere proteins using autoimmune sera from patients with scleroderma

1 reference

12 December 2020

Two Chemically and Metabolically Distinct Forms of Calf Thymus Histone F3

1 reference

12 December 2020

Common features of analogous replacement histone H3 genes in animals and plants

1 reference

12 December 2020

Chicken erythrocyte histone H5; I amino terminal sequence (70 residues)

1 reference

12 December 2020

Histone III. VI. Two forms of calf thymus histone III

1 reference

12 December 2020

Histone 2A, a heteromorphous family of eight protein species

1 reference

12 December 2020

The appearance of male gamete-specific histones gH2B and gH3 during pollen development in Lilium longiflorum

1 reference

12 December 2020

The histone H1 complements of dividing and nondividing cells of the mouse

1 reference

12 December 2020

Structural homology between a mammalian H1(0) subfraction and avian erythrocyte-specific histone H5

1 reference

12 December 2020

Distinct dynamics of HISTONE3 variants between the two fertilization products in plants

1 reference

12 December 2020

Identifiers

DOI

10.1186/1756-8935-5-7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22650316%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

2 February 2020

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/1756-8935-5-7

Fatcat ID

release_sogsv3jwgjfydml6nyobczmsoa

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/sogsv3jwgjfydml6nyobczmsoa

24 November 2022

mapped directly with Wikidata item

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22650316%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

PubMed publication ID

22650316

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22650316%20AND%20SRC:MED&resulttype=core&format=json