The process of mRNA-tRNA translocation (Q30480890)

13 August 2017

The process of mRNA-tRNA translocation (English)

1 reference

13 August 2017

1

Joachim Frank

0 references

Ning Gao

object named as

Ning Gao

4

0 references

author name string

Haixiao Gao

2

1 reference

13 August 2017

Jayati Sengupta

3

1 reference

13 August 2017

Derek J Taylor

5

1 reference

13 August 2017

language of work or name

English

0 references

publication date

14 November 2007

1 reference

Proceedings of the National Academy of Sciences of the United States of America

13 August 2017

1 reference

13 August 2017

104

1 reference

13 August 2017

50

1 reference

13 August 2017

19671-19678

1 reference

Structural basis for aminoglycoside inhibition of bacterial ribosome recycling

13 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

Crystal structure of the ribosome recycling factor bound to the ribosome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

Elongation factor G stabilizes the hybrid-state conformation of the 70S ribosome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

RF3 induces ribosomal conformational changes responsible for dissociation of class I release factors

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

Structures of modified eEF2 80S ribosome complexes reveal the role of GTP hydrolysis in translocation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

Intersubunit movement is required for ribosomal translocation.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

Structural basis for interaction of the ribosome with the switch regions of GTP-bound elongation factors

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

Kinetically competent intermediates in the translocation step of protein synthesis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

Identification of two distinct hybrid state intermediates on the ribosome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

Structural basis for messenger RNA movement on the ribosome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

Crystal structure of a 70S ribosome-tRNA complex reveals functional interactions and rearrangements

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

Structure of the 70S ribosome complexed with mRNA and tRNA

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

Role and timing of GTP binding and hydrolysis during EF-G-dependent tRNA translocation on the ribosome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

The hybrid state of tRNA binding is an authentic translation elongation intermediate

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

Structures of the bacterial ribosome at 3.5 A resolution

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

RNA structure: reading the ribosome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

Mechanism for the disassembly of the posttermination complex inferred from cryo-EM studies

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

The cryo-EM structure of a translation initiation complex from Escherichia coli

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

The role of tRNA as a molecular spring in decoding, accommodation, and peptidyl transfer

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

X-ray crystallography study on ribosome recycling: the mechanism of binding and action of RRF on the 50S ribosomal subunit

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

Visualization of ribosome-recycling factor on the Escherichia coli 70S ribosome: functional implications

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

Visualization of release factor 3 on the ribosome during termination of protein synthesis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

Domain movements of elongation factor eEF2 and the eukaryotic 80S ribosome facilitate tRNA translocation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

EF-G-independent reactivity of a pre-translocation-state ribosome complex with the aminoacyl tRNA substrate puromycin supports an intermediate (hybrid) state of tRNA binding

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

Incorporation of aminoacyl-tRNA into the ribosome as seen by cryo-electron microscopy

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

Dynamic reorganization of the functionally active ribosome explored by normal mode analysis and cryo-electron microscopy

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

Locking and unlocking of ribosomal motions

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

Mechanism of elongation factor G function in tRNA translocation on the ribosome.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

Ratchet-like movements between the two ribosomal subunits: their implications in elongation factor recognition and tRNA translocation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

Structure of the Escherichia coli ribosomal termination complex with release factor 2

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

A cryo-electron microscopic study of ribosome-bound termination factor RF2

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

High resolution structure of the large ribosomal subunit from a mesophilic eubacterium

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

The guanine nucleotide-binding switch in three dimensions

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

Structure of the 80S ribosome from Saccharomyces cerevisiae--tRNA-ribosome and subunit-subunit interactions

14 July 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

14 July 2018

https://api.crossref.org/works/10.1073%2FPNAS.0708517104

The kink-turn: a new RNA secondary structure motif

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

Recognition of cognate transfer RNA by the 30S ribosomal subunit

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

RNA tertiary interactions in the large ribosomal subunit: the A-minor motif

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

Crystal structures of complexes of the small ribosomal subunit with tetracycline, edeine and IF3.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

Crystal structure of the ribosome at 5.5 A resolution

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

Conformational change of elongation factor Tu (EF-Tu) induced by antibiotic binding. Crystal structure of the complex between EF-Tu.GDP and aurodox

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

Crystal structure of an initiation factor bound to the 30S ribosomal subunit

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

Mechanism of ribosomal peptide bond formation.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

Movement of the decoding region of the 16 S ribosomal RNA accompanies tRNA translocation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

A ratchet-like inter-subunit reorganization of the ribosome during translocation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

Three-dimensional cryo-electron microscopy localization of EF2 in the Saccharomyces cerevisiae 80S ribosome at 17.5 A resolution

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

Large-scale movement of elongation factor G and extensive conformational change of the ribosome during translocation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

Identification of an RNA-protein bridge spanning the ribosomal subunit interface

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

X-ray crystal structures of 70S ribosome functional complexes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

EF-G-dependent GTP hydrolysis induces translocation accompanied by large conformational changes in the 70S ribosome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

Visualization of elongation factor G on the Escherichia coli 70S ribosome: the mechanism of translocation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

The ribosome-in-pieces: binding of elongation factor EF-G to oligoribonucleotides that mimic the sarcin/ricin and thiostrepton domains of 23S ribosomal RNA.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

Hydrolysis of GTP by elongation factor G drives tRNA movement on the ribosome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

The ribosomal neighbourhood of the central fold of tRNA: cross-links from position 47 of tRNA located at the A, P or E site

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

Three-dimensional structure of the ribosomal translocase: elongation factor G from Thermus thermophilus

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

The crystal structure of elongation factor G complexed with GDP, at 2.7 A resolution

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

A model of protein synthesis based on cryo-electron microscopy of the E. coli ribosome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

How does the ribosome work? A hypothesis based on the two subunit construction of the ribosome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

Study of the mechanism of translocation in ribosomes. 1. Polyphenylalanine synthesis in Escherichia coli ribosomes without participation of guanosine-5'-triphosphate and protein translation factors

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

Studies on the formation of transfer ribonucleic acid-ribosome complexes. VI. Oligopeptide synthesis and translocation on ribosomes in the presence and absence of soluble transfer factors.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

Studies on the formation of transfer ribonucleic acid-ribosome complexes. 3. The formation of peptide bonds by ribosomes in the absence of supernatant enzymes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

Evidence that the G2661 region of 23S rRNA is located at the ribosomal binding sites of both elongation factors.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

Intermediate states in the movement of transfer RNA in the ribosome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

Interaction of elongation factors EF-G and EF-Tu with a conserved loop in 23S RNA.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

Three-dimensional reconstruction of the 70S Escherichia coli ribosome in ice: the distribution of ribosomal RNA.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

Ribotoxin recognition of ribosomal RNA and a proposal for the mechanism of translocation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

Factor-free ("non-enzymic") and factor-dependent systems of translation of polyuridylic acid by Escherichia coli ribosomes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

Crystal Structures of the Ribosome in Complex with Release Factors RF1 and RF2 Bound to a Cognate Stop Codon

14 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0708517104

Interactions of the release factor RF1 with the ribosome as revealed by cryo-EM.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0708517104

Observation of intersubunit movement of the ribosome in solution using FRET.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0708517104

Ribosomal Proteins S12 and S13 Function as Control Elements for Translocation of the mRNA:tRNA Complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0708517104

Coupling of GTP hydrolysis by elongation factor G to translocation and factor recycling on the ribosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0708517104

Global ribosome motions revealed with elastic network model

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0708517104

The A-site finger in 23 S rRNA acts as a functional attenuator for translocation

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0708517104

Crystal structure of a mutant elongation factor G trapped with a GTP analogue

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0708517104

GTPase activation of elongation factors Tu and G on the ribosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0708517104

Conformational transition of initiation factor 2 from the GTP- to GDP-bound state visualized on the ribosome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0708517104

Interactions of translational factor EF-G with the bacterial ribosome before and after mRNA translocation

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0708517104

An elongation factor G-induced ribosome rearrangement precedes tRNA-mRNA translocation

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0708517104

Contribution of 16S rRNA nucleotides forming the 30S subunit A and P sites to translation in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0708517104

[How do ribosome binding sites recognize the functional state of tRNA?].

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148355

Translocation in Protein Synthesis: A Hybrid Structure Model

26 November 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0708517104

Role of Domains 4 and 5 in Elongation Factor G Functions on the Ribosome

21 January 2018

1 reference

12 December 2020

Elongation factor G and protein S12 are the nearest neighbours in the Escherichia coli ribosome

1 reference

12 December 2020

The conformational properties of elongation factor G and the mechanism of translocation

1 reference

12 December 2020

Structural dynamics of translating ribosomes

1 reference

12 December 2020

Effect of buffer conditions on the position of tRNA on the 70 S ribosome as visualized by cryoelectron microscopy

1 reference

12 December 2020

Ribosomal protein S12 and ‘non-enzymatic’ translocation

1 reference

12 December 2020

Crosslinking of translation factor EF-G to proteins of the bacterial ribosome before and after translocation

1 reference

12 December 2020

Interaction of SH-reagents with the ribosomal 30 S subparticle and 'non-enzymatic' translocation

1 reference

12 December 2020

Puromycin reaction of the A-site bound peptidyl-tRNA

1 reference

12 December 2020

Kinetic and thermodynamic parameters for tRNA binding to the ribosome and for the translocation reaction

1 reference

12 December 2020

Stimulation of "non-enzymic" translocation in ribosomes by p-chloromercuribenzoate

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0708517104

1 reference

13 August 2017

0 references

1 reference

13 August 2017

PubMed publication ID

18003906

1 reference