Transcriptomic Analysis of C. elegans RNA Sequencing Data Through the Tuxedo Suite on the Galaxy Project (Q30491525)

18 July 2018

title

Transcriptomic Analysis of C. elegans RNA Sequencing Data Through the Tuxedo Suite on the Galaxy Project (English)

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18 July 2018

main subject

Caenorhabditis elegans

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Francis R G Amrit

1

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18 July 2018

Arjumand Ghazi

series ordinal

2

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18 July 2018

language of work or name

English

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publication date

8 April 2017

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18 July 2018

Journal of Visualized Experiments

published in

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18 July 2018

issue

122

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18 July 2018

describes a project that uses

Tuxedo Suite

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cites work

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Analysis of Whole Transcriptome Sequencing Data: Workflow and Software

28 July 2018

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DAF-16 and TCER-1 Facilitate Adaptation to Germline Loss by Restoring Lipid Homeostasis and Repressing Reproductive Physiology in C. elegans

28 July 2018

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Advanced Applications of RNA Sequencing and Challenges

28 July 2018

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Lipid-mediated regulation of SKN-1/Nrf in response to germ cell absence

28 July 2018

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28 July 2018

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Differential analysis of gene regulation at transcript resolution with RNA-seq

28 July 2018

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Transcriptional networks that mediate signals from reproductive tissues to influence lifespan

28 July 2018

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Autophagy and lipid metabolism coordinately modulate life span in germline-less C. elegans

28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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Multimodal RNA-seq using single-strand, double-strand, and CircLigase-based capture yields a refined and extended description of the C. elegans transcriptome

28 July 2018

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28 July 2018

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Comparison and calibration of transcriptome data from RNA-Seq and tiling arrays

28 July 2018

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28 July 2018

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The Caenorhabditis elegans germ line regulates distinct signaling pathways to control lifespan and innate immunity

28 July 2018

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C. elegans major fats are stored in vesicles distinct from lysosome-related organelles

28 July 2018

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A transcription elongation factor that links signals from the reproductive system to lifespan extension in Caenorhabditis elegans

28 July 2018

1 reference

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TopHat: discovering splice junctions with RNA-Seq

28 July 2018

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Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

28 July 2018

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28 July 2018

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Fat metabolism links germline stem cells and longevity in C. elegans

28 July 2018

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28 July 2018

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Ontological analysis of gene expression data: current tools, limitations, and open problems

28 July 2018

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Initial sequencing and analysis of the human genome

28 July 2018

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28 July 2018

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Signals from the reproductive system regulate the lifespan of C. elegans

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5564484

Genome sequence of the nematode C. elegans: a platform for investigating biology

28 July 2018

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BioWardrobe: an integrated platform for analysis of epigenomics and transcriptomics data

28 July 2018

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Next-generation sequencing platforms

26 November 2018

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Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5564484

New genes that extend Caenorhabditis elegans' lifespan in response to reproductive signals

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5564484

Identification of novel transcripts in annotated genomes using RNA-Seq

26 November 2018

1 reference

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5564484

26 November 2018

Identifiers

DOI

10.3791/55473

1 reference

18 July 2018

PMC publication ID

5564484

1 reference

18 July 2018

PubMed publication ID

28448031

1 reference

18 July 2018