Using RNA sample titrations to assess microarray platform performance and normalization techniques (Q30504703)

24 September 2017

Using RNA sample titrations to assess microarray platform performance and normalization techniques (English)

1 reference

24 September 2017

Danielle Thierry-Mieg

14

Danielle Thierry-Mieg

0 references

Jean Thierry-Mieg

Jean Thierry-Mieg

13

0 references

Charles D. Johnson

Charles D Johnson

6

0 references

Yaron Turpaz

20

Yaron Turpaz

1 reference

24 September 2017

Richard Shippy

1

1 reference

24 September 2017

Stephanie Fulmer-Smentek

2

1 reference

24 September 2017

Roderick V Jensen

3

1 reference

24 September 2017

Wendell D Jones

4

1 reference

24 September 2017

Paul K Wolber

5

1 reference

24 September 2017

P Scott Pine

7

1 reference

24 September 2017

Cecilie Boysen

8

1 reference

24 September 2017

Xu Guo

9

1 reference

24 September 2017

Eugene Chudin

10

1 reference

24 September 2017

Yongming Andrew Sun

11

1 reference

24 September 2017

James C Willey

12

1 reference

24 September 2017

Robert A Setterquist

15

1 reference

24 September 2017

Mike Wilson

16

1 reference

24 September 2017

Anne Bergstrom Lucas

17

1 reference

24 September 2017

Natalia Novoradovskaya

18

1 reference

24 September 2017

Adam Papallo

19

1 reference

24 September 2017

Shawn C Baker

21

1 reference

24 September 2017

Janet A Warrington

22

1 reference

24 September 2017

Leming Shi

23

1 reference

24 September 2017

Damir Herman

24

1 reference

24 September 2017

1 September 2006

1 reference

24 September 2017

1 reference

24 September 2017

24

1 reference

24 September 2017

9

1 reference

24 September 2017

1123-1131

1 reference

The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272080

Evaluation of external RNA controls for the assessment of microarray performance

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272080

A simple method for assessing sample sizes in microarray experiments

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272080

The PowerAtlas: a power and sample size atlas for microarray experimental design and research

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272080

An interactive power analysis tool for microarray hypothesis testing and generation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272080

Use of a mixed tissue RNA design for performance assessments on multiple microarray formats

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272080

Experimental comparison and cross-validation of the Affymetrix and Illumina gene expression analysis platforms

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272080

Cross-platform comparability of microarray technology: intra-platform consistency and appropriate data analysis procedures are essential

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272080

Independence and reproducibility across microarray platforms

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272080

Interlaboratory comparability study of cancer gene expression analysis using oligonucleotide microarrays.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272080

Performance evaluation of commercial short-oligonucleotide microarrays and the impact of noise in making cross-platform correlations

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272080

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272080

Spotted long oligonucleotide arrays for human gene expression analysis.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272080

Oligodeoxyribonucleotide probe accessibility on a three-dimensional DNA microarray surface and the effect of hybridization time on the accuracy of expression ratios

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272080

Summaries of Affymetrix GeneChip probe level data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272080

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272080

A study of accuracy and precision in oligonucleotide arrays: extracting more signal at large concentrations

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272080

Expression profiling with oligonucleotide arrays: technologies and applications for neurobiology

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272080

Differential gene expression patterns revealed by oligonucleotide versus long cDNA arrays

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272080

Determination of minimum sample size and discriminatory expression patterns in microarray data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272080

Accuracy and calibration of commercial oligonucleotide and custom cDNA microarrays

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272080

Assessment of the relationship between signal intensities and transcript concentration for Affymetrix GeneChip arrays

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272080

Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272080

Multiple-laboratory comparison of microarray platforms

20 June 2018

1 reference

Comparison of Affymetrix GeneChip expression measures.

21 January 2018

1 reference

Effect of normalization on significance testing for oligonucleotide microarrays

21 January 2018

1 reference

A benchmark for Affymetrix GeneChip expression measures

21 January 2018

1 reference

Stochastic models inspired by hybridization theory for short oligonucleotide arrays.

21 January 2018

1 reference

A Model-Based Background Adjustment for Oligonucleotide Expression Arrays

21 January 2018

1 reference

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/NBT1241

1 reference

24 September 2017

1 reference

24 September 2017

PubMed publication ID

16964226

1 reference