Diverse and widespread contamination evident in the unmapped depths of high throughput sequencing data (Q30865295)

17 October 2017

Diverse and widespread contamination evident in the unmapped depths of high throughput sequencing data (English)

1 reference

high-throughput sequencing

17 October 2017

1 reference

Richard W Lusk

1

1 reference

17 October 2017

language of work or name

English

0 references

publication date

29 October 2014

1 reference

17 October 2017

1 reference

17 October 2017

9

1 reference

17 October 2017

10

1 reference

17 October 2017

e110808

1 reference

Creative Commons Attribution 4.0 International

17 October 2017

start time

29 October 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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21 June 2018

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Subglacial Lake Vostok (Antarctica) accretion ice contains a diverse set of sequences from aquatic, marine and sediment-inhabiting bacteria and eukarya

21 June 2018

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A Microbial Metagenome (Leucobacter sp.) in Caenorhabditis Whole Genome Sequences

21 June 2018

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Plant and fungal diversity in gut microbiota as revealed by molecular and culture investigations

21 June 2018

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Probing meiotic recombination and aneuploidy of single sperm cells by whole-genome sequencing

21 June 2018

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The complex exogenous RNA spectra in human plasma: an interface with human gut biota?

21 June 2018

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DNA template strand sequencing of single-cells maps genomic rearrangements at high resolution

21 June 2018

1 reference

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Preparation of high-quality next-generation sequencing libraries from picogram quantities of target DNA.

21 June 2018

1 reference

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Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform

21 June 2018

1 reference

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Exogenous plant MIR168a specifically targets mammalian LDLRAP1: evidence of cross-kingdom regulation by microRNA

21 June 2018

1 reference

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DNA extraction columns contaminated with murine sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4213012

Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq

21 June 2018

1 reference

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Fast identification and removal of sequence contamination from genomic and metagenomic datasets

21 June 2018

1 reference

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Tumour evolution inferred by single-cell sequencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4213012

Abundant human DNA contamination identified in non-primate genome databases

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4213012

An efficient multistrategy DNA decontamination procedure of PCR reagents for hypersensitive PCR applications

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4213012

Molecular analysis of malassezia microflora on the skin of the patients with atopic dermatitis

21 June 2018

1 reference

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4213012

Skin microbiota: a source of disease or defence?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4213012

Residual DNA in thermostable DNA polymerases - a cause of irritation in diagnostic PCR and microarray assays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4213012

Serendipitous discovery of Wolbachia genomes in multiple Drosophila species

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4213012

Detection of bacterial DNA in blood samples from febrile patients: underestimated infection or emerging contamination?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4213012

Evidence for a prokaryotic insertion-sequence contamination in eukaryotic sequences registered in different databases

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4213012

Initial sequencing and comparative analysis of the mouse genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4213012

Initial sequencing and analysis of the human genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4213012

Contamination and sensitivity issues with a real-time universal 16S rRNA PCR

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4213012

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4213012

Contamination of DNA database sequence entries with Escherichia coli insertion sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4213012

Identification and elimination of DNA sequences in Taq DNA polymerase.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4213012

Predominant Gram-Positive Bacteria in Human Feces: Numbers, Variety, and Persistence

21 June 2018

1 reference

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Polymerase chain reaction: trenches to benches

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4213012

Contamination of Qiagen DNA extraction kits with Legionella DNA.

21 June 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0110808

An investigation of the rigor of interpretation rules for STRs derived from less than 100 pg of DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0110808

Statistical assignment of DNA sequences using Bayesian phylogenetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0110808

Deoxyribonuclease activity and circulating DNA concentration in blood plasma of patients with prostate tumors.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0110808

Animal DNA in PCR reagents plagues ancient DNA research

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0110808

Evidence of contamination in PCR laboratory disposables

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25354084

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Optimized procedure for DNA isolation from fresh and cryopreserved clotted human blood useful in clinical molecular testing

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25354084

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0110808

1 reference

release_a74nygzxnjhqxolgxjte6khphm

17 October 2017

0 references

1 reference

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/a74nygzxnjhqxolgxjte6khphm

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

17 October 2017

PubMed publication ID

25354084

1 reference