Incorporating gene-specific variation when inferring and evaluating optimal evolutionary tree topologies from multilocus sequence data (Q30984774)

1 October 2017

Incorporating gene-specific variation when inferring and evaluating optimal evolutionary tree topologies from multilocus sequence data (English)

1 reference

1 October 2017

Tae-Kun Seo

1

1 reference

1 October 2017

Hirohisa Kishino

series ordinal

2

1 reference

1 October 2017

Jeffrey L Thorne

series ordinal

3

1 reference

1 October 2017

language of work or name

English

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publication date

11 March 2005

1 reference

Proceedings of the National Academy of Sciences of the United States of America

1 October 2017

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1 October 2017

102

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1 October 2017

12

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1 October 2017

4436-4441

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Bayesian phylogenetic analysis of combined data

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=555482

Are combined analyses better than single gene phylogenies? A case study using SSU rDNA and rbcL sequence comparisons in the Zygnematophyceae (Streptophyta).

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=555482

Hierarchical Phylogenetic Models for Analyzing Multipartite Sequence Data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=555482

Identifying Conflicting Signal in a Multigene Analysis Reveals a Highly Resolved Tree: The Phylogeny of Rodentia (Mammalia)

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=555482

Bayes estimation of species divergence times and ancestral population sizes using DNA sequences from multiple loci

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=555482

MrBayes 3: Bayesian phylogenetic inference under mixed models

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=555482

Protein evolution with dependence among codons due to tertiary structure.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=555482

Mitochondrial phylogeny of hedgehogs and monophyly of Eulipotyphla

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=555482

Combining multiple data sets in a likelihood analysis: which models are the best?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=555482

A likelihood approach to estimating phylogeny from discrete morphological character data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=555482

Likelihood-based tests of topologies in phylogenetics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=555482

CONSEL: for assessing the confidence of phylogenetic tree selection

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=555482

Interordinal relationships and timescale of eutherian evolution as inferred from mitochondrial genome data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=555482

Estimation of primate speciation dates using local molecular clocks

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=555482

Plastid genome phylogeny and a model of amino acid substitution for proteins encoded by chloroplast DNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=555482

Coevolving protein residues: maximum likelihood identification and relationship to structure.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=555482

Maximum-Likelihood Models for Combined Analyses of Multiple Sequence Data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=555482

Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=555482

Confidence Limits on Phylogenies: an Approach using the Bootstrap

21 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408313102

A dependent-rates model and an MCMC-based methodology for the maximum-likelihood analysis of sequences with overlapping reading frames.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408313102

Phylogenetic position of turtles among amniotes: evidence from mitochondrial and nuclear genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408313102

On Information and Sufficiency

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408313102

Rapid evaluation of the phylogenetic congruence of sequence data using likelihood ratio tests

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15764703

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Maximum likelihood analysis of gene-based and structure-based process partitions, using mammalian mitochondrial genomes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15764703

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0408313102

1 reference

1 October 2017

0 references

1 reference

1 October 2017

PubMed publication ID

15764703

1 reference