Configurational diffusion down a folding funnel describes the dynamics of DNA hairpins (Q30994432)

14 August 2017

Configurational diffusion down a folding funnel describes the dynamics of DNA hairpins (English)

1 reference

14 August 2017

Ansari A

1

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14 August 2017

Kuznetsov SV

series ordinal

2

1 reference

14 August 2017

Shen Y

series ordinal

3

1 reference

14 August 2017

language of work or name

English

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publication date

1 July 2001

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Proceedings of the National Academy of Sciences of the United States of America

14 August 2017

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14 August 2017

98

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14 August 2017

14

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14 August 2017

7771-7776

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Modeling RNA folding paths with pseudoknots: application to hepatitis delta virus ribozyme

14 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35417

Dynamics of the RNA hairpin GNRA tetraloop

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35417

A simple model for calculating the kinetics of protein folding from three-dimensional structures

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35417

Kinetics of conformational fluctuations in DNA hairpin-loops

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35417

Protein folding kinetics exhibit an Arrhenius temperature dependence when corrected for the temperature dependence of protein stability

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35417

Folding dynamics and mechanism of beta-hairpin formation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35417

Thermodynamic properties of an extremely rapid protein folding reaction

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35417

Titration properties and thermodynamics of the transition state for folding: comparison of two-state and multi-state folding pathways.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35417

Most compact hairpin-turn structure exerted by a short DNA fragment, d(GCGAAGC) in solution: an extraordinarily stable structure resistant to nucleases and heat

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35417

Funnels, pathways, and the energy landscape of protein folding: a synthesis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35417

Free energy of imperfect nucleic acid helices. II. Small hairpin loops

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35417

Spin glasses and the statistical mechanics of protein folding

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35417

Diffusion in a rough potential

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35417

On loop folding in nucleic acid hairpin-type structures

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35417

Analysis of melting transitions of the DNA hairpins formed from the oligomer sequences d[GGATAC(X)4GTATCC] (X = A, T, G, C).

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35417

The role of solvent viscosity in the dynamics of protein conformational changes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35417

Protein folding funnels: a kinetic approach to the sequence-structure relationship

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35417

Helix formation by dAT oligomers. I. Hairpin and straight-chain helices.

21 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.131477798

Folding of RNA involves parallel pathways

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.131477798

FRET Fluctuation Spectroscopy: Exploring the Conformational Dynamics of a DNA Hairpin Loop

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.131477798

Stability of RNA hairpin loops: A6-Cm-U6

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.131477798

Relaxation kinetics of dimer formation by self complementary oligonucleotides

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.131477798

Rate of unwinding small DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.131477798

Sequence dependent rigidity of single stranded DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.131477798

Structure and dynamics of a fluorescent DNA oligomer containing the EcoRI recognition sequence: fluorescence, molecular dynamics, and NMR studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.131477798

Melting and premelting transitions of an oligomer measured by DNA base fluorescence and absorption

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.131477798

Studies of DNA dumbbells VII: evaluation of the next-nearest-neighbor sequence-dependent interactions in duplex DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.131477798

Hairpin formation in synthetic oligonucleotides

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.131477798

The molecular mechanism of thermal unfolding of Escherichia coli formylmethionine transfer RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.131477798

Kinetic intermediates in RNA folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.131477798

A thermodynamic framework and cooperativity in the tertiary folding of a Mg2+-dependent ribozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.131477798

21 January 2018

Identifiers

DOI

10.1073/PNAS.131477798

1 reference

14 August 2017

0 references

1 reference

14 August 2017

PubMed publication ID

11438730

1 reference