Bacterial Virus Ontology; Coordinating across Databases. (Q32183828)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28545254%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

title

Bacterial Virus Ontology; Coordinating across Databases (English)

1 reference

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21 March 2020

0 references

David Osumi-Sutherland

4

1 reference

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21 March 2020

Edouard de Castro

5

1 reference

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21 March 2020

Sylvain Poux

7

1 reference

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21 March 2020

Ioannis Xenarios

9

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21 March 2020

Philippe Le Mercier

10

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21 March 2020

1

Chantal Hulo

1 reference

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21 March 2020

6

Andrea H Auchincloss

1 reference

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21 March 2020

author name string

Patrick Masson

2

1 reference

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21 March 2020

Ariane Toussaint

3

1 reference

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21 March 2020

Lydie Bougueleret

8

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21 March 2020

publication date

23 May 2017

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21 March 2020

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21 March 2020

volume

9

1 reference

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21 March 2020

issue

6

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21 March 2020

page(s)

126

1 reference

Creative Commons Attribution 4.0 International

28 June 2019

copyright license

start time

23 May 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

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A structured annotation frame for the transposable phages: a new proposed family "Saltoviridae" within the Caudovirales

14 July 2018

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HAMAP in 2015: updates to the protein family classification and annotation system

14 July 2018

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An integrated ontology resource to explore and study host-virus relationships

14 July 2018

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The elemental composition of virus particles: implications for marine biogeochemical cycles

14 July 2018

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CRISPR-Cas systems: Prokaryotes upgrade to adaptive immunity

14 July 2018

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Phage lysis: three steps, three choices, one outcome

14 July 2018

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Structure and assembly of filamentous bacteriophages.

14 July 2018

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Phage T7 Gp2 inhibition of Escherichia coli RNA polymerase involves misappropriation of 70 domain 1.1

14 July 2018

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Phage lysis: do we have the hole story yet?

14 July 2018

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Revenge of the phages: defeating bacterial defences

14 July 2018

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Identification and characterization of a novel flagellum-dependent Salmonella-infecting bacteriophage, iEPS5

14 July 2018

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A bacteriophage encodes its own CRISPR/Cas adaptive response to evade host innate immunity

14 July 2018

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Learning from bacteriophages - advantages and limitations of phage and phage-encoded protein applications

14 July 2018

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Bacteriophage genes that inactivate the CRISPR/Cas bacterial immune system.

14 July 2018

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Tools from viruses: bacteriophage successes and beyond

14 July 2018

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Efficient reversal of phiC31 integrase recombination in mammalian cells

14 July 2018

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Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation

14 July 2018

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Short noncontractile tail machines: adsorption and DNA delivery by podoviruses

14 July 2018

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Long noncontractile tail machines of bacteriophages.

14 July 2018

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Contractile tail machines of bacteriophages

14 July 2018

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Bacteriophages and their implications on future biotechnology: a review

14 July 2018

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Filamentous bacteriophage: biology, phage display and nanotechnology applications

14 July 2018

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A promiscuous DNA packaging machine from bacteriophage T4

14 July 2018

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ViralZone: a knowledge resource to understand virus diversity

14 July 2018

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Inhibition of superinfection and the evolution of viral latency

14 July 2018

1 reference

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Bacteriophage resistance mechanisms

14 July 2018

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The Gene Ontology in 2010: extensions and refinements

14 July 2018

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Explaining microbial population genomics through phage predation.

14 July 2018

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Purification and functional characterization of phiX174 lysis protein E.

14 July 2018

1 reference

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Why bacteriophage encode exotoxins and other virulence factors

14 July 2018

1 reference

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Recombineering: a homologous recombination-based method of genetic engineering

14 July 2018

1 reference

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RecBCD enzyme and the repair of double-stranded DNA breaks

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5490803

PhiGO, a phage ontology associated with the ACLAME database

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5490803

Identification and specificity of pilus adsorption proteins of filamentous bacteriophages infecting Pseudomonas aeruginosa

14 July 2018

1 reference

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Phage abortive infection in lactococci: variations on a theme

14 July 2018

1 reference

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14 July 2018

The third age of phage

1 reference

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The genome of S-PM2, a "photosynthetic" T4-type bacteriophage that infects marine Synechococcus strains

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5490803

Phage taxonomy: we agree to disagree

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5490803

Independent functions of viral protein and nucleic acid in growth of bacteriophage

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5490803

Common themes among bacteriophage-encoded virulence factors and diversity among the bacteriophages involved

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5490803

Bacteriophage control of bacterial virulence

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5490803

Bacteriophage Mu DNA circularizes following infection of Escherichia coli

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5490803

The lysis function of RNA bacteriophage Qbeta is mediated by the maturation (A2) protein

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5490803

Differential role of the Mu B protein in phage Mu integration vs. replication: mechanistic insights into two transposition pathways

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5490803

Gene ontology: tool for the unification of biology

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5490803

Inactivation of FhuA at the cell surface of Escherichia coli K-12 by a phage T5 lipoprotein at the periplasmic face of the outer membrane

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5490803

Plasmid-directed assembly of the lipid-containing membrane of bacteriophage phi 6.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5490803

Superinfection exclusion by T-even-type coliphages

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5490803

Degradation of Escherichia coli Chromosome After Infection by Bacteriophage T4: Role of Bacteriophage Gene D2a

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5490803

Heterogeneous progeny viruses are produced by a budding enveloped phage

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5490803

Cloning and identification of bacteriophage T4 gene 2 product gp2 and action of gp2 on infecting DNA in vivo

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5490803

The effects of substituted pyrimidines in DNAs on cleavage by sequence-specific endonucleases

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5490803

Molecular model for the transposition and replication of bacteriophage Mu and other transposable elements

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5490803

Lipid-containing Bacteriophage PR4: Structure and Life Cycle

14 July 2018

1 reference

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Conversion of linear DNA with hairpin telomeres into a circular molecule in the course of phage N15 lytic replication.

14 July 2018

1 reference

Restriction and modification enzymes and their recognition sequences

21 January 2018

1 reference

The lambda Gam protein inhibits RecBCD binding to dsDNA ends

21 January 2018

1 reference

Dmd of bacteriophage T4 functions as an antitoxin against Escherichia coli LsoA and RnlA toxins.

21 January 2018

1 reference

A phage-encoded inhibitor of Escherichia coli DNA replication targets the DNA polymerase clamp loader

21 January 2018

1 reference

Competition of bacteriophage polypeptides with native replicase proteins for binding to the DNA sliding clamp reveals a novel mechanism for DNA replication arrest in Staphylococcus aureus

21 January 2018

1 reference

Assembly of bacteriophage lambda terminase into a viral DNA maturation and packaging machine.

21 January 2018

1 reference

Sequential model of phage PRD1 DNA delivery: active involvement of the viral membrane

21 January 2018

1 reference

Restriction and modification enzymes and their recognition sequences

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5490803

Phage DNA synthesis and host DNA degradation in the life cycle of Lactococcus lactis bacteriophage c6A

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28545254

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Switch from theta to sigma replication of bacteriophage lambda DNA: factors involved in the process and a model for its regulation.

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28545254

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Gene 0.3 of bacteriophage T7 acts to overcome the DNA restriction system of the host

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28545254

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.3390/V9060126

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28545254%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28545254%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

PubMed publication ID

28545254

1 reference