A global assembly of cotton ESTs. (Q33233916)

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16 January 2020

title

A global assembly of cotton ESTs (English)

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16 January 2020

33

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16 January 2020

Bulak A Arpat

10

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16 January 2020

Chen Xiao-Ya

14

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16 January 2020

Rickie B Turley

17

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16 January 2020

Danny J Llewellyn

30

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16 January 2020

31

Elizabeth S Dennis

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16 January 2020

36

Jonathan F Wendel

1 reference

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16 January 2020

34

Andrew H Paterson

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16 January 2020

author name string

Joshua A Udall

1

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16 January 2020

Jordan M Swanson

2

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16 January 2020

Karl Haller

3

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16 January 2020

Ryan A Rapp

4

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16 January 2020

Michael E Sparks

5

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16 January 2020

Jamie Hatfield

6

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16 January 2020

Yeisoo Yu

7

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16 January 2020

Yingru Wu

8

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16 January 2020

Caitriona Dowd

9

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16 January 2020

Brad A Sickler

11

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16 January 2020

Thea A Wilkins

12

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16 January 2020

Jin Ying Guo

13

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Jodi Scheffler

15

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16 January 2020

Earl Taliercio

16

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16 January 2020

Helen McFadden

18

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Paxton Payton

19

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16 January 2020

Natalya Klueva

20

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16 January 2020

Randell Allen

21

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16 January 2020

Deshui Zhang

22

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16 January 2020

Candace Haigler

23

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16 January 2020

Curtis Wilkerson

24

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Jinfeng Suo

25

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16 January 2020

Stefan R Schulze

26

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16 January 2020

Margaret L Pierce

27

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Margaret Essenberg

28

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16 January 2020

Hyeran Kim

29

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16 January 2020

David Kudrna

32

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16 January 2020

Cari Soderlund

35

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16 January 2020

publication date

14 February 2006

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16 January 2020

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16 January 2020

volume

16

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16 January 2020

issue

3

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16 January 2020

page(s)

441-450

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Differential methylation of genes and repeats in land plants

16 January 2020

cites work

1 reference

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The map-based sequence of the rice genome

21 June 2018

1 reference

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Large-scale statistical analysis of secondary xylem ESTs in pine.

21 June 2018

1 reference

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Development of an expressed sequence tag (EST) resource for wheat (Triticum aestivum L.): EST generation, unigene analysis, probe selection and bioinformatics for a 16,000-locus bin-delineated map.

21 June 2018

1 reference

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Organ-specific silencing of duplicated genes in a newly synthesized cotton allotetraploid

21 June 2018

1 reference

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Members of a new group of chitinase-like genes are expressed preferentially in cotton cells with secondary walls

21 June 2018

1 reference

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Gene expression profile changes in cotton root and hypocotyl tissues in response to infection with Fusarium oxysporum f. sp. vasinfectum

21 June 2018

1 reference

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Methods for transcriptional profiling in plants. Be fruitful and replicate

21 June 2018

1 reference

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MUSCLE: multiple sequence alignment with high accuracy and high throughput

21 June 2018

1 reference

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A new resource for cereal genomics: 22K barley GeneChip comes of age.

21 June 2018

1 reference

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A 3347-locus genetic recombination map of sequence-tagged sites reveals features of genome organization, transmission and evolution of cotton (Gossypium).

21 June 2018

1 reference

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The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology

21 June 2018

1 reference

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The Pfam protein families database

21 June 2018

1 reference

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UniProt: the Universal Protein knowledgebase

21 June 2018

1 reference

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Analysis and functional annotation of an expressed sequence tag collection for tropical crop sugarcane

21 June 2018

1 reference

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Efficient clustering of large EST data sets on parallel computers

21 June 2018

1 reference

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Isolation and analyses of genes preferentially expressed during early cotton fiber development by subtractive PCR and cDNA array

21 June 2018

1 reference

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Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415220

Comparative analyses of potato expressed sequence tag libraries

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415220

EST analysis in barley defines a unigene set comprising 4,000 genes.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415220

Molecular characterization of the cotton GhTUB1 gene that is preferentially expressed in fiber

21 June 2018

1 reference

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The Bioperl toolkit: Perl modules for the life sciences

21 June 2018

1 reference

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Identification, analysis, and utilization of conserved ortholog set markers for comparative genomics in higher plants

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415220

Isolation of a cotton RGP gene: a homolog of reversibly glycosylated polypeptide highly expressed during fiber development

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415220

Annotated expressed sequence tags and cDNA microarrays for studies of brain and behavior in the honey bee.

21 June 2018

1 reference

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Gene expression profiles during the initial phase of salt stress in rice

21 June 2018

1 reference

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Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

21 June 2018

1 reference

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The comparison of gene expression from multiple cDNA libraries

21 June 2018

1 reference

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Copy number lability and evolutionary dynamics of the Adh gene family in diploid and tetraploid cotton (Gossypium).

21 June 2018

1 reference

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Gene ontology: tool for the unification of biology

21 June 2018

1 reference

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ESTScan: a program for detecting, evaluating, and reconstructing potential coding regions in EST sequences

21 June 2018

1 reference

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Large-scale statistical analyses of rice ESTs reveal correlated patterns of gene expression

21 June 2018

1 reference

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CAP3: A DNA sequence assembly program

21 June 2018

1 reference

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Computational methods for the identification of differential and coordinated gene expression.

21 June 2018

1 reference

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Detecting selective expression of genes and proteins

21 June 2018

1 reference

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D-subgenome bias of Xcm resistance genes in tetraploid Gossypium (cotton) suggests that polyploid formation has created novel avenues for evolution.

21 June 2018

1 reference

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Specific expression of an expansin gene during elongation of cotton fibres

21 June 2018

1 reference

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Polyploid formation created unique avenues for response to selection in Gossypium (cotton).

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415220

Base-calling of automated sequencer traces using phred. I. Accuracy assessment

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415220

Identification and characterization of differentially expressed ESTs of Gossypium barbadense infected by Verticillium dahliae with suppression subtractive hybridization

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415220

Expression patterns of duplicate genes in the developing root in Arabidopsis thaliana.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415220

Functional genomics of cell elongation in developing cotton fibers.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415220

Mining EST databases to resolve evolutionary events in major crop species

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415220

Picky: oligo microarray design for large genomes.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415220

Identification of GhMYB109 encoding a R2R3 MYB transcription factor that expressed specifically in fiber initials and elongating fibers of cotton (Gossypium hirsutum L.)

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415220

Modeling sequencing errors by combining Hidden Markov models.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415220

Annotation of the Arabidopsis genome

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415220

Rate variation among nuclear genes and the age of polyploidy in Gossypium

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415220

Evolution and expression of MYB genes in diploid and polyploid cotton

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415220

Differential evolutionary dynamics of duplicated paralogous Adh loci in allotetraploid cotton (Gossypium).

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415220

DNA sequence quality trimming and vector removal

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415220

ESTs, cDNA microarrays, and gene expression profiling: tools for dissecting plant physiology and development

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415220

Discrimination of homoeologous gene expression in hexaploid wheat by SNP analysis of contigs grouped from a large number of expressed sequence tags

31 October 2018

1 reference

12 December 2020

Arabidopsis microarray service facilities

1 reference

12 December 2020

Phylogeny, duplication, and intraspecific variation of Adh sequences in New World diploid cottons (Gossypium l., malvaceae)

1 reference

12 December 2020

Rapid diversification of the cotton genus (Gossypium: Malvaceae) revealed by analysis of sixteen nuclear and chloroplast genes

1 reference

12 December 2020

Identifiers

DOI

10.1101/GR.4602906

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16478941%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16478941%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

PubMed publication ID

16478941

1 reference