Cell cycle-specified fluctuation of nucleosome occupancy at gene promoters (Q33258473)

24 July 2017

title

Cell cycle-specified fluctuation of nucleosome occupancy at gene promoters (English)

1 reference

24 July 2017

Gregory J Hogan

1

1 reference

24 July 2017

Cheol-Koo Lee

series ordinal

2

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24 July 2017

Jason D Lieb

series ordinal

3

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24 July 2017

publication date

8 August 2006

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24 July 2017

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24 July 2017

volume

2

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24 July 2017

issue

9

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24 July 2017

page(s)

e158

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Creative Commons Attribution 4.0 International

24 July 2017

copyright license

start time

22 September 2006

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Nucleosome stability at the yeast PHO5 and PHO8 promoters correlates with differential cofactor requirements for chromatin opening

21 June 2018

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Histone variant H2A.Z marks the 5' ends of both active and inactive genes in euchromatin

21 June 2018

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21 June 2018

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21 June 2018

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Genome-scale identification of nucleosome positions in S. cerevisiae

21 June 2018

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Cell cycle-dependent transcription in yeast: promoters, transcription factors, and transcriptomes

21 June 2018

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Sterile 20 kinase phosphorylates histone H2B at serine 10 during hydrogen peroxide-induced apoptosis in S. cerevisiae

21 June 2018

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21 June 2018

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Global chromatin structure of 45,000 base pairs of chromosome III in a- and alpha-cell yeast and during mating-type switching

21 June 2018

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Global nucleosome occupancy in yeast

21 June 2018

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Chromatin disassembly mediated by the histone chaperone Asf1 is essential for transcriptional activation of the yeast PHO5 and PHO8 genes

21 June 2018

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Genomewide demarcation of RNA polymerase II transcription units revealed by physical fractionation of chromatin

21 June 2018

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Development and validation of a T7 based linear amplification for genomic DNA

21 June 2018

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Program-specific distribution of a transcription factor dependent on partner transcription factor and MAPK signaling.

21 June 2018

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Serial regulation of transcriptional regulators in the yeast cell cycle

21 June 2018

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Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association

21 June 2018

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Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF

21 June 2018

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Forkhead-like transcription factors recruit Ndd1 to the chromatin of G2/M-specific promoters

21 June 2018

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Cell cycle-regulated histone acetylation required for expression of the yeast HO gene

21 June 2018

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Ordered recruitment of transcription and chromatin remodeling factors to a cell cycle- and developmentally regulated promoter.

21 June 2018

1 reference

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NDD1, a high-dosage suppressor of cdc28-1N, is essential for expression of a subset of late-S-phase-specific genes in Saccharomyces cerevisiae

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570381

Cluster analysis and display of genome-wide expression patterns

21 June 2018

1 reference

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Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization

21 June 2018

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A genome-wide transcriptional analysis of the mitotic cell cycle

21 June 2018

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Pheromone-regulated genes required for yeast mating differentiation

21 June 2018

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Crystal structure of the nucleosome core particle at 2.8 A resolution

21 June 2018

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Transcription factors vs nucleosomes: regulation of the PHO5 promoter in yeast

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570381

Interplay between nucleosomes and transcription factors at the yeast PHO5 promoter

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570381

Chromosome condensation and sister chromatid pairing in budding yeast

21 June 2018

1 reference

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A nucleosome precludes binding of the transcription factor Pho4 in vivo to a critical target site in the PHO5 promoter

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570381

Reactions of Nucleic Acids and NucleoDroteins with Formaldehyde

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570381

Removal of positioned nucleosomes from the yeast PHO5 promoter upon PHO5 induction releases additional upstream activating DNA elements.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570381

A ten-minute DNA preparation from yeast efficiently releases autonomous plasmids for transformation of Escherichia coli

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570381

Depletion of histone H4 and nucleosomes activates the PHO5 gene in Saccharomyces cerevisiae.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570381

Formaldehyde-mediated DNA-protein crosslinking: a probe for in vivo chromatin structures

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570381

Nucleosome loss activates yeast downstream promoters in vivo

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570381

Sensitive, high-resolution chromatin and chromosome mapping in situ: presence and orientation of two closely integrated copies of EBV in a lymphoma line

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570381

Upstream activation sequence-dependent alteration of chromatin structure and transcription activation of the yeast GAL1-GAL10 genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570381

A functional role for nucleosomes in the repression of a yeast promoter

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570381

A method for the rapid sequence-independent amplification of microdissected chromosomal material

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570381

Nucleosome disruption at the yeast PHO5 promoter upon PHO5 induction occurs in the absence of DNA replication

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570381

The histone chaperone Asf1 increases the rate of histone eviction at the yeast PHO5 and PHO8 promoters.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570381

Histones are incorporated in trans during reassembly of the yeast PHO5 promoter

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570381

Evidence for nucleosome depletion at active regulatory regions genome-wide

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570381

Removal of promoter nucleosomes by disassembly rather than sliding in vivo

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570381

Histones are first hyperacetylated and then lose contact with the activated PHO5 promoter.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570381

Nucleosomes unfold completely at a transcriptionally active promoter.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570381

Nucleosome transactions on the promoters of the yeast GAL and PHO genes

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570381

Mechanism of protein access to specific DNA sequences in chromatin: a dynamic equilibrium model for gene regulation

31 October 2018

1 reference

12 December 2020

Intrinsic histone-DNA interactions and low nucleosome density are important for preferential accessibility of promoter regions in yeast

1 reference

12 December 2020

Global role for chromatin remodeling enzymes in mitotic gene expression

1 reference

12 December 2020

Properties of formaldehyde-treated nucleohistone

1 reference

12 December 2020

Both positive and negative regulators of HO transcription are required for mother-cell-specific mating-type switching in yeast

1 reference

12 December 2020

10.1371/JOURNAL.PGEN.0020158

Identifiers

DOI

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24 July 2017

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24 July 2017

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