Improved benchmarks for computational motif discovery (Q33287239)

25 July 2017

title

Improved benchmarks for computational motif discovery (English)

1 reference

25 July 2017

main subject

computational benchmark

1 reference

Finn Drabløs

4

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Geir Kjetil Sandve

series ordinal

1

object named as

Geir Kjetil Sandve

1 reference

25 July 2017

Osman Abul

2

1 reference

25 July 2017

Vegard Walseng

series ordinal

3

1 reference

25 July 2017

publication date

8 June 2007

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25 July 2017

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25 July 2017

volume

8

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25 July 2017

page(s)

193

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Creative Commons Attribution 2.0 Generic

25 July 2017

copyright license

start time

8 June 2007

1 reference

April 2022 Public Data File from Crossref

Creative Commons Attribution 2.0 Generic

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copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

cites work

Analysis of computational approaches for motif discovery

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1903367

A survey of motif discovery methods in an integrated framework

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1903367

A multistep bioinformatic approach detects putative regulatory elements in gene promoters

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1903367

Identification of transcription factor binding sites with variable-order Bayesian networks

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1903367

An extension and novel solution to the (l,d)-motif challenge problem.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1903367

Assessing computational tools for the discovery of transcription factor binding sites

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1903367

Drosophila DNase I footprint database: a systematic genome annotation of transcription factor binding sites in the fruitfly, Drosophila melanogaster.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1903367

YMF: A program for discovery of novel transcription factor binding sites by statistical overrepresentation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1903367

Finding motifs in the twilight zone

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1903367

Discovery of regulatory elements by a computational method for phylogenetic footprinting

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1903367

A computational analysis of sequence features involved in recognition of short introns

21 June 2018

1 reference

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Combinatorial approaches to finding subtle signals in DNA sequences.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1903367

Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae

21 June 2018

1 reference

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TRANSFAC: a database on transcription factors and their DNA binding sites

21 June 2018

1 reference

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Automated construction and graphical presentation of protein blocks from unaligned sequences

21 June 2018

1 reference

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The value of prior knowledge in discovering motifs with MEME

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1903367

Quantitative analysis of the relationship between nucleotide sequence and functional activity

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1903367

A statistical analysis of the TRANSFAC database.

21 June 2018

1 reference

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Modeling within-motif dependence for transcription factor binding site predictions

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1903367

31 October 2018

Identifiers

DOI

10.1186/1471-2105-8-193

1 reference

journals/bmcbi/SandveAWD07

25 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

25 July 2017

1 reference