rMotifGen: random motif generator for DNA and protein sequences (Q33293468)

25 July 2017

1 reference

title

rMotifGen: random motif generator for DNA and protein sequences (English)

1 reference

25 July 2017

Eric C Rouchka

1

1 reference

25 July 2017

C Timothy Hardin

series ordinal

2

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25 July 2017

publication date

7 August 2007

1 reference

25 July 2017

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25 July 2017

volume

8

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25 July 2017

page(s)

292

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Creative Commons Attribution 2.0 Generic

25 July 2017

copyright license

start time

7 August 2007

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

cites work

MEME: discovering and analyzing DNA and protein sequence motifs

1 reference

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Limitations and potentials of current motif discovery algorithms

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1963340

A Gibbs sampler for identification of symmetrically structured, spaced DNA motifs with improved estimation of the signal length.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1963340

Assessing computational tools for the discovery of transcription factor binding sites

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1963340

Weeder Web: discovery of transcription factor binding sites in a set of sequences from co-regulated genes

21 June 2018

1 reference

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Finding functional sequence elements by multiple local alignment

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1963340

YMF: A program for discovery of novel transcription factor binding sites by statistical overrepresentation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1963340

Gibbs Recursive Sampler: finding transcription factor binding sites

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1963340

BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1963340

Combinatorial approaches to finding subtle signals in DNA sequences.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1963340

Shufflet: shuffling sequences while conserving the k-let counts.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1963340

Discovering regulatory elements in non-coding sequences by analysis of spaced dyads

21 June 2018

1 reference

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Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae

21 June 2018

1 reference

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Identifying DNA and protein patterns with statistically significant alignments of multiple sequences

21 June 2018

1 reference

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An approach to detection of protein structural motifs using an encoding scheme of backbone conformations

21 June 2018

1 reference

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21 June 2018

1 reference

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Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees

21 June 2018

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TRANSFAC: a database on transcription factors and their DNA binding sites

21 June 2018

1 reference

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Gibbs motif sampling: detection of bacterial outer membrane protein repeats

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1963340

Artificially generated data sets for testing DNA sequence assembly algorithms

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1963340

Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1963340

The SWISS-PROT protein sequence data bank

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1963340

PROSITE: a dictionary of sites and patterns in proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1963340

LOGOS: a modular Bayesian model for de novo motif detection

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1963340

Environmentally induced foregut remodeling by PHA-4/FoxA and DAF-12/NHR.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1963340

A higher-order background model improves the detection of promoter regulatory elements by Gibbs sampling

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1963340

ANN-Spec: a method for discovering transcription factor binding sites with improved specificity.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1963340

GenRGenS: software for generating random genomic sequences and structures

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1963340

Finding composite regulatory patterns in DNA sequences

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17683637

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

DNA Motif Detection Using Particle Swarm Optimization and Expectation-Maximization

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17683637

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-8-292

1 reference

journals/bmcbi/RouchkaH07

25 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

25 July 2017

1 reference