Measuring the rates of spontaneous mutation from deep and large-scale polymorphism data (Q33467737)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19528323%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

title

Measuring the rates of spontaneous mutation from deep and large-scale polymorphism data (English)

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31 January 2020

1

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31 January 2020

author name string

Philipp W Messer

series ordinal

1

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PubMed publication ID

19528323

27 July 2017

language of work or name

English

0 references

publication date

15 June 2009

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31 January 2020

number of pages

14

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inferred from page(s)

published in

Genetics

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31 January 2020

volume

182

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31 January 2020

issue

4

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31 January 2020

page(s)

1219-1232

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Inferring population mutation rate and sequencing error rate using the SNP frequency spectrum in a sample of DNA sequences

31 January 2020

cites work

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Fundamental concepts in genetics: Effective population size and patterns of molecular evolution and variation

21 June 2018

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Mutation patterns in the human genome: more variable than expected

21 June 2018

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Pervasive hitchhiking at coding and regulatory sites in humans

21 June 2018

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Inferring the strength of selection in Drosophila under complex demographic models.

21 June 2018

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21 June 2018

Selection on Codon Bias

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Estimation of nucleotide diversity, disequilibrium coefficients, and mutation rates from high-coverage genome-sequencing projects

21 June 2018

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Direct estimation of the mitochondrial DNA mutation rate in Drosophila melanogaster

21 June 2018

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A genome-wide view of the spectrum of spontaneous mutations in yeast.

21 June 2018

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Assessing the evolutionary impact of amino acid mutations in the human genome

21 June 2018

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The impact of recombination on nucleotide substitutions in the human genome

21 June 2018

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Population genetic analysis of shotgun assemblies of genomic sequences from multiple individuals

21 June 2018

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Genomewide spatial correspondence between nonsynonymous divergence and neutral polymorphism reveals extensive adaptation in Drosophila

21 June 2018

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Population genomics: whole-genome analysis of polymorphism and divergence in Drosophila simulans

21 June 2018

1 reference

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Recent and ongoing selection in the human genome

21 June 2018

1 reference

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Mutation rate variation in multicellular eukaryotes: causes and consequences

21 June 2018

1 reference

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The distribution of fitness effects of new mutations

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2728861

Adaptation or biased gene conversion? Extending the null hypothesis of molecular evolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2728861

Mutations of Bacteria from Virus Sensitivity to Virus Resistance

21 June 2018

1 reference

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Inferring the demographic history and rate of adaptive substitution in Drosophila

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2728861

The genomic rate of adaptive evolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2728861

The Distribution of Gene Frequencies Under Irreversible Mutation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2728861

The distribution of fitness effects of new deleterious amino acid mutations in humans

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2728861

Approximate Bayesian inference reveals evidence for a recent, severe bottleneck in a Netherlands population of Drosophila melanogaster

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2728861

Natural selection on protein-coding genes in the human genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2728861

Simultaneous inference of selection and population growth from patterns of variation in the human genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2728861

Mutation rate variation in the mammalian genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2728861

Estimating the distribution of fitness effects from DNA sequence data: implications for the molecular clock

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2728861

Estimating the distribution of selection coefficients from phylogenetic data with applications to mitochondrial and viral DNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2728861

Testing the neutral theory of molecular evolution with genomic data from Drosophila.

21 June 2018

1 reference

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Mutation rates in mammalian genomes

21 June 2018

1 reference

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Positive and negative selection on the human genome

21 June 2018

1 reference

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The evolution of isochores

21 June 2018

1 reference

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Estimate of the mutation rate per nucleotide in humans

21 June 2018

1 reference

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Genetic traces of ancient demography

21 June 2018

1 reference

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Natural selection and the frequency distributions of "silent" DNA polymorphism in Drosophila.

21 June 2018

1 reference

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The effect of deleterious mutations on neutral molecular variation

21 June 2018

1 reference

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Cytosine deamination in mismatched base pairs

21 June 2018

1 reference

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The distribution of mutation effects on viability in Drosophila melanogaster

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2728861

Evolution of a finite population under gene conversion

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2728861

Evolutionary Rate at the Molecular Level

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2728861

The age of a neutral mutant persisting in a finite population

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2728861

The "hitchhiking effect" revisited

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2728861

The effect of change in population size on DNA polymorphism

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2728861

Statistical method for testing the neutral mutation hypothesis by DNA polymorphism

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2728861

Adaptive protein evolution at the Adh locus in Drosophila

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2728861

Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2728861

Population genetics of polymorphism and divergence

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2728861

On the number of segregating sites in genetical models without recombination

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2728861

Can one learn history from the allelic spectrum?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2728861

The McDonald-Kreitman test and slightly deleterious mutations

31 October 2018

1 reference

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Joint inference of the distribution of fitness effects of deleterious mutations and population demography based on nucleotide polymorphism frequencies

31 October 2018

1 reference

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Adaptive evolution of non-coding DNA in Drosophila

31 October 2018

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High mutation rate and predominance of insertions in the Caenorhabditis elegans nuclear genome.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2728861

Distribution of the strength of selection against amino acid replacements in human proteins

31 October 2018

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12 December 2020

DNA sequencing. A plan to capture human diversity in 1000 genomes

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12 December 2020

Effective population size/adult population size ratios in wildlife: a review

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12 December 2020

A NOTE ON THE SPEED OF GENE FREQUENCY CHANGES IN REVERSE DIRECTIONS IN A FINITE POPULATION

1 reference

12 December 2020

10.1534/GENETICS.109.105692

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19528323%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19528323%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

PubMed publication ID

19528323

1 reference