Extracting transcription factor targets from ChIP-Seq data (Q33474249)

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English	Extracting transcription factor targets from ChIP-Seq data	scientific article

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PubMed publication ID

19553195

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27 July 2017

title

Extracting transcription factor targets from ChIP-Seq data (English)

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Europe PubMed Central

PubMed publication ID

19553195

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27 July 2017

author name string

Geetu Tuteja

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1

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Europe PubMed Central

PubMed publication ID

19553195

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27 July 2017

Peter White

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2

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Europe PubMed Central

PubMed publication ID

19553195

retrieved

27 July 2017

Jonathan Schug

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3

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Europe PubMed Central

PubMed publication ID

19553195

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27 July 2017

Klaus H Kaestner

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4

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Europe PubMed Central

PubMed publication ID

19553195

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27 July 2017

language of work or name

English

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publication date

24 June 2009

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Europe PubMed Central

PubMed publication ID

19553195

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27 July 2017

published in

Nucleic Acids Research

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Europe PubMed Central

PubMed publication ID

19553195

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27 July 2017

volume

37

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Europe PubMed Central

PubMed publication ID

19553195

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27 July 2017

issue

17

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Europe PubMed Central

PubMed publication ID

19553195

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27 July 2017

page(s)

e113

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Europe PubMed Central

PubMed publication ID

19553195

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27 July 2017

cites work

Genomic location analysis by ChIP-Seq

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761252

retrieved

14 July 2018

Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761252

retrieved

14 July 2018

PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761252

retrieved

14 July 2018

Design and analysis of ChIP-seq experiments for DNA-binding proteins

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761252

retrieved

14 July 2018

An integrated software system for analyzing ChIP-chip and ChIP-seq data

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761252

retrieved

14 July 2018

Model-based analysis of ChIP-Seq (MACS)

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761252

retrieved

14 July 2018

F-Seq: a feature density estimator for high-throughput sequence tags

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761252

retrieved

14 July 2018

Modeling ChIP sequencing in silico with applications

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761252

retrieved

14 July 2018

Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761252

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14 July 2018

Global analysis of in vivo Foxa2-binding sites in mouse adult liver using massively parallel sequencing

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761252

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14 July 2018

FindPeaks 3.1: a tool for identifying areas of enrichment from massively parallel short-read sequencing technology

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761252

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14 July 2018

Cis-regulatory modules in the mammalian liver: composition depends on strength of Foxa2 consensus site

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761252

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14 July 2018

Integration of external signaling pathways with the core transcriptional network in embryonic stem cells

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761252

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14 July 2018

Sequence census methods for functional genomics

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761252

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14 July 2018

Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761252

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14 July 2018

Genome-wide mapping of in vivo protein-DNA interactions

1 reference

stated in

PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761252

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14 July 2018

DNA microarray technologies for measuring protein-DNA interactions

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761252

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14 July 2018

BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes.

1 reference

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761252

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14 July 2018

ChIP-seq: welcome to the new frontier

1 reference

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761252

retrieved

31 October 2018

Identifiers

DOI

10.1093/NAR/GKP536

1 reference

stated in

Europe PubMed Central

PubMed publication ID

19553195

retrieved

27 July 2017

PMC publication ID

2761252

1 reference

stated in

Europe PubMed Central

PubMed publication ID

19553195

retrieved

27 July 2017

PubMed publication ID

19553195

1 reference

stated in

Europe PubMed Central

PubMed publication ID

19553195

retrieved

27 July 2017

ResearchGate publication ID

26317594

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