Exact distribution of a pattern in a set of random sequences generated by a Markov source: applications to biological data (Q33537448)

27 July 2017

title

Exact distribution of a pattern in a set of random sequences generated by a Markov source: applications to biological data (English)

1 reference

27 July 2017

Gregory Nuel

1

1 reference

27 July 2017

Leslie Regad

series ordinal

2

1 reference

27 July 2017

Juliette Martin

series ordinal

3

1 reference

27 July 2017

Anne-Claude Camproux

series ordinal

4

1 reference

27 July 2017

publication date

26 January 2010

1 reference

Algorithms for Molecular Biology

27 July 2017

published in

1 reference

27 July 2017

volume

5

1 reference

27 July 2017

page(s)

15

1 reference

Creative Commons Attribution 2.0 Generic

27 July 2017

copyright license

start time

26 January 2010

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2828453

RSAT: regulatory sequence analysis tools

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2828453

21 June 2018

The 20 years of PROSITE

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2828453

The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2828453

Exact p-value calculation for heterotypic clusters of regulatory motifs and its application in computational annotation of cis-regulatory modules

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2828453

Analysis of an optimal hidden Markov model for secondary structure prediction

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2828453

Numerical solutions for patterns statistics on Markov chains

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2828453

Computational approaches to gene prediction.

21 June 2018

1 reference

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Effective p-value computations using Finite Markov Chain Imbedding (FMCI): application to local score and to pattern statistics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2828453

A hidden markov model derived structural alphabet for proteins.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2828453

Statistical significance of clusters of motifs represented by position specific scoring matrices in nucleotide sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2828453

Mining Bacillus subtilis chromosome heterogeneities using hidden Markov models

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2828453

Compositional bias in DNA.

21 June 2018

1 reference

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Probabilistic and statistical properties of words: an overview

21 June 2018

1 reference

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DNA binding sites: representation and discovery

21 June 2018

1 reference

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Statistical analysis of yeast genomic downstream sequences reveals putative polyadenylation signals

21 June 2018

1 reference

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Oligonucleotide bias in Bacillus subtilis: general trends and taxonomic comparisons

21 June 2018

1 reference

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Over- and underrepresentation of short DNA words in herpesvirus genomes

21 June 2018

1 reference

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Stochastic models for heterogeneous DNA sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2828453

Linguistics of nucleotide sequences. I: The significance of deviations from mean statistical characteristics and prediction of the frequencies of occurrence of words.

21 June 2018

1 reference

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Base compositional structure of genomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2828453

First and second moment of counts of words in random texts generated by Markov chains.

21 June 2018

1 reference

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Statistical analyses of counts and distributions of restriction sites in DNA sequences

21 June 2018

1 reference

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Faster exact Markovian probability functions for motif occurrences: a DFA-only approach.

21 June 2018

1 reference

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LD-SPatt: large deviations statistics for patterns on Markov chains.

31 October 2018

1 reference

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The statistical significance of nucleotide position-weight matrix matches.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2828453

Compound Poisson and Poisson Process Approximations for Occurrences of Multiple Words in Markov Chains

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2828453

Contribution of horizontally acquired genomic islands to the evolution of the tubercle bacilli

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20205909

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identification of the Chi site of Haemophilus influenzae as several sequences related to the Escherichia coli Chi site

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20205909

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1748-7188-5-15

1 reference

27 July 2017

DBLP publication ID

journals/almob/NuelRMC10

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

27 July 2017

1 reference