Integrating physical and genetic maps: from genomes to interaction networks (Q33609193)

28 July 2017

1 reference

title

Integrating physical and genetic maps: from genomes to interaction networks (English)

1 reference

28 July 2017

3

Trey Ideker

1 reference

28 July 2017

Andreas Beyer

1

1 reference

28 July 2017

Sourav Bandyopadhyay

series ordinal

2

1 reference

28 July 2017

publication date

1 September 2007

1 reference

28 July 2017

published in

Nature Reviews Genetics

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28 July 2017

volume

8

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28 July 2017

issue

9

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28 July 2017

page(s)

699-710

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Transcription factor modularity in a gene-centered C. elegans core neuronal protein-DNA interaction network

28 July 2017

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities

21 June 2018

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Ions of the interactome: the role of MS in the study of protein interactions in proteomics and structural biology

21 June 2018

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Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements

21 June 2018

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A direct comparison of protein interaction confidence assignment schemes

21 June 2018

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21 June 2018

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A strategy for extracting and analyzing large-scale quantitative epistatic interaction data

21 June 2018

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Integrated assessment and prediction of transcription factor binding

21 June 2018

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Combining gene expression QTL mapping and phenotypic spectrum analysis to uncover gene regulatory relationships.

21 June 2018

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Deciphering principles of transcription regulation in eukaryotic genomes.

21 June 2018

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Gene function prediction from congruent synthetic lethal interactions in yeast

21 June 2018

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A systems approach to mapping DNA damage response pathways

21 June 2018

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Modeling cellular machinery through biological network comparison

21 June 2018

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Global landscape of protein complexes in the yeast Saccharomyces cerevisiae

21 June 2018

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Disentangling information flow in the Ras-cAMP signaling network

21 June 2018

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The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells

21 June 2018

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21 June 2018

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Proteome survey reveals modularity of the yeast cell machinery

21 June 2018

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A global map of p53 transcription-factor binding sites in the human genome

21 June 2018

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21 June 2018

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Exploration of the function and organization of the yeast early secretory pathway through an epistatic miniarray profile

21 June 2018

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High-throughput two-hybrid analysis. The promise and the peril

21 June 2018

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Towards a proteome-scale map of the human protein–protein interaction network

21 June 2018

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A human protein-protein interaction network: a resource for annotating the proteome

21 June 2018

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Genome-wide map of nucleosome acetylation and methylation in yeast

21 June 2018

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Genetic interactions between polymorphisms that affect gene expression in yeast

21 June 2018

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Integrative model of the response of yeast to osmotic shock

21 June 2018

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Validation and refinement of gene-regulatory pathways on a network of physical interactions

21 June 2018

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Motifs, themes and thematic maps of an integrated Saccharomyces cerevisiae interaction network

21 June 2018

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An integrative genomics approach to infer causal associations between gene expression and disease

21 June 2018

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Systematic interpretation of genetic interactions using protein networks

21 June 2018

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Derivation of genetic interaction networks from quantitative phenotype data

21 June 2018

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Navigating the chaperone network: an integrative map of physical and genetic interactions mediated by the hsp90 chaperone

21 June 2018

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High-throughput mapping of a dynamic signaling network in mammalian cells

21 June 2018

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A gateway-compatible yeast one-hybrid system.

21 June 2018

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Transcriptional regulatory code of a eukaryotic genome

21 June 2018

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Protein interaction networks from yeast to human

21 June 2018

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WebQTL: rapid exploratory analysis of gene expression and genetic networks for brain and behavior

21 June 2018

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21 June 2018

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Global mapping of the yeast genetic interaction network

21 June 2018

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Chemogenomic profiling: identifying the functional interactions of small molecules in yeast

21 June 2018

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A map of the interactome network of the metazoan C. elegans

21 June 2018

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21 June 2018

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A protein interaction map of Drosophila melanogaster

21 June 2018

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A gene-coexpression network for global discovery of conserved genetic modules

21 June 2018

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Assessing experimentally derived interactions in a small world

21 June 2018

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Genetics of gene expression surveyed in maize, mouse and man

21 June 2018

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An automated method for finding molecular complexes in large protein interaction networks

21 June 2018

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Techniques patents for SNP genotyping

21 June 2018

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Comparative assessment of large-scale data sets of protein-protein interactions

21 June 2018

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21 June 2018

Whole-genome disassembly

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Capturing chromosome conformation

21 June 2018

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Functional organization of the yeast proteome by systematic analysis of protein complexes

21 June 2018

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Systematic genetic analysis with ordered arrays of yeast deletion mutants

21 June 2018

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Protein-protein interaction panel using mouse full-length cDNAs

21 June 2018

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Classifying by colors: FISH-based genome analysis.

21 June 2018

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Genome annotation: from sequence to biology

21 June 2018

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Protein--protein interaction maps: a lead towards cellular functions

21 June 2018

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Integrated genomic and proteomic analyses of a systematically perturbed metabolic network

21 June 2018

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A comprehensive two-hybrid analysis to explore the yeast protein interactome

21 June 2018

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Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF

21 June 2018

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Genome-wide location and function of DNA binding proteins

21 June 2018

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Functional discovery via a compendium of expression profiles

21 June 2018

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Identification of in vivo DNA targets of chromatin proteins using tethered dam methyltransferase

21 June 2018

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A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae

21 June 2018

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Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles

21 June 2018

1 reference

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Cluster analysis and display of genome-wide expression patterns

21 June 2018

1 reference

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The language of gene interaction

21 June 2018

1 reference

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Base-calling of automated sequencer traces using phred. I. Accuracy assessment

21 June 2018

1 reference

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Sequencing the human genome

21 June 2018

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The cell-bag of enzymes or network of channels?

21 June 2018

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Correlation of two-hybrid affinity data with in vitro measurements

21 June 2018

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The c-Fos protein interacts with c-Jun/AP-1 to stimulate transcription of AP-1 responsive genes

21 June 2018

1 reference

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Complexes of sequential metabolic enzymes

21 June 2018

1 reference

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Radiation hybrid mapping: a somatic cell genetic method for constructing high-resolution maps of mammalian chromosomes

21 June 2018

1 reference

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Ordering gene function: the interpretation of epistasis in regulatory hierarchies

21 June 2018

1 reference

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Simulation of quantitative characters from qualitatively acting genes : II. Orthogonal subdivision of hereditary variance in two-locus genetic systems.

21 June 2018

1 reference

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RNAi screens in Caenorhabditis elegans in a 96-well liquid format and their application to the systematic identification of genetic interactions

30 October 2018

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Prediction of phenotype and gene expression for combinations of mutations

30 October 2018

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An integrative approach for causal gene identification and gene regulatory pathway inference

30 October 2018

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Systematic mapping of genetic interactions in Caenorhabditis elegans identifies common modifiers of diverse signaling pathways

30 October 2018

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A gene-centered C. elegans protein-DNA interaction network

30 October 2018

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Predicting interactions in protein networks by completing defective cliques.

30 October 2018

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Predictive models of molecular machines involved in Caenorhabditis elegans early embryogenesis.

30 October 2018

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Modular epistasis in yeast metabolism.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811081

30 October 2018

Physical network models.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811081

DNA helicase gene interaction network defined using synthetic lethality analyzed by microarray

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811081

Studying complex biological systems using multifactorial perturbation.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811081

A history of the Human Genome Project.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811081

Comparison of human genetic and sequence-based physical maps

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811081

The linear arrangement of six sex-linked factors in Drosophila, as shown by their mode of association

30 October 2018

1 reference

New method for mapping genes in human chromosomes

31 March 2020

1 reference

A probabilistic functional network of yeast genes

31 March 2020

1 reference

Probabilistic model of the human protein-protein interaction network

31 March 2020

1 reference

Identification and characterization of protein subcomplexes in yeast

31 March 2020

1 reference

The human genome. Controversial from the start.

31 March 2020

1 reference

Are genome-wide association studies all that we need to dissect the genetic component of complex human diseases?

31 March 2020

1 reference

A guide through present computational approaches for the identification of mammalian microRNA targets

31 March 2020

1 reference

Problems with genome-wide association studies

31 March 2020

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17703239

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NRG2144

1 reference

Dimensions Publication ID

28 July 2017

0 references

1 reference

28 July 2017

1 reference