Distributed probing of chromatin structure in vivo reveals pervasive chromatin accessibility for expressed and non-expressed genes during tissue differentiation in C. elegans (Q33651724)

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English	Distributed probing of chromatin structure in vivo reveals pervasive chromatin accessibility for expressed and non-expressed genes during tissue differentiation in C. elegans	scientific article

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scholarly article

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Europe PubMed Central

PubMed publication ID

28 July 2017

Distributed probing of chromatin structure in vivo reveals pervasive chromatin accessibility for expressed and non-expressed genes during tissue differentiation in C. elegans (English)

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Europe PubMed Central

PubMed publication ID

28 July 2017

Caenorhabditis elegans

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Andrew Fire

8

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ORCID Public Data File 2021

author name string

Ky Sha

1

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Europe PubMed Central

PubMed publication ID

28 July 2017

Sam G Gu

2

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Europe PubMed Central

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28 July 2017

Luiz C Pantalena-Filho

3

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Europe PubMed Central

PubMed publication ID

28 July 2017

Amy Goh

4

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Europe PubMed Central

PubMed publication ID

28 July 2017

Jamie Fleenor

5

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Europe PubMed Central

PubMed publication ID

28 July 2017

Daniel Blanchard

6

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28 July 2017

Chaya Krishna

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28 July 2017

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publication date

6 August 2010

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Europe PubMed Central

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28 July 2017

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Europe PubMed Central

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28 July 2017

11

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Europe PubMed Central

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28 July 2017

465

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Europe PubMed Central

PubMed publication ID

28 July 2017

Local DNA topography correlates with functional noncoding regions of the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091661

28 July 2018

Genome-scale identification of Caenorhabditis elegans regulatory elements by tiling-array mapping of DNase I hypersensitive sites.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091661

28 July 2018

A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091661

28 July 2018

High-resolution mapping and characterization of open chromatin across the genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091661

28 July 2018

High-throughput in vivo analysis of gene expression in Caenorhabditis elegans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091661

28 July 2018

Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091661

28 July 2018

Dam methylation: coordinating cellular processes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091661

28 July 2018

The use of prokaryotic DNA methyltransferases as experimental and analytical tools in modern biology

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091661

28 July 2018

Gene expression profiling of cells, tissues, and developmental stages of the nematode C. elegans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091661

28 July 2018

Heterochromatin and epigenetic control of gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091661

28 July 2018

Chromatin profiling using targeted DNA adenine methyltransferase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091661

28 July 2018

Recruitment of single-stranded recombinant adeno-associated virus vector genomes and intermolecular recombination are responsible for stable transduction of liver in vivo

1 reference

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28 July 2018

Identification of in vivo DNA targets of chromatin proteins using tethered dam methyltransferase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091661

28 July 2018

In vivo chromatin accessibility correlates with gene silencing in Drosophila

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091661

28 July 2018

Sequence requirements for myosin gene expression and regulation in Caenorhabditis elegans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091661

28 July 2018

pha-1, a selectable marker for gene transfer in C. elegans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091661

28 July 2018

The dam and dcm strains of Escherichia coli--a review

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091661

28 July 2018

Positioned nucleosomes inhibit Dam methylation in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091661

28 July 2018

Sequence specific cleavage of DNA by micrococcal nuclease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091661

28 July 2018

Cleavage of chromatin with methidiumpropyl-EDTA . iron(II).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091661

28 July 2018

The genetics of Caenorhabditis elegans

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091661

28 July 2018

Expression of the Escherichia coli dam methylase in Saccharomyces cerevisiae: effect of in vivo adenine methylation on genetic recombination and mutation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091661

28 July 2018

Micrococcal nuclease as a DNA structural probe: its recognition sequences, their genomic distribution and correlation with DNA structure determinants.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091661

28 July 2018

The great GATC: DNA methylation in E. coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091661

28 July 2018

Two highly conserved transcribed regions in the 5S DNA repeats of the nematodes Caenorhabditis elegans and Caenorhabditis briggsae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091661

28 July 2018

Efficient gene transfer in C.elegans: extrachromosomal maintenance and integration of transforming sequences

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091661

28 July 2018

Partitioning the C. elegans genome by nucleosome modification, occupancy, and positioning

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091661

30 October 2018

NA-Seq: a discovery tool for the analysis of chromatin structure and dynamics during differentiation.

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091661

30 October 2018

High-resolution profiling of histone methylations in the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091661

30 October 2018

Unique features of the apoptotic endonuclease DFF40/CAD relative to micrococcal nuclease as a structural probe for chromatin.

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091661

30 October 2018

Identification and mapping of open chromatin regions within a 140 kb polygenic locus of human chromosome 19 using E. coli Dam methylase.

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30 October 2018

Genome-scale identification of nucleosome positions in S. cerevisiae

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091661

30 October 2018

Mapping chromatin structure in vivo using DNA methyltransferases.

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091661

30 October 2018

[Inactivation of reporter genes by cloned heterochromatic repeats of Drosophila melanogaster is accompanied by chromatin compaction]

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30 October 2018

A region of the myosin rod important for interaction with paramyosin in Caenorhabditis elegans striated muscle.

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091661

30 October 2018

Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans

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30 October 2018

Introduction of a DNA methyltransferase into Drosophila to probe chromatin structure in vivo.

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30 October 2018

RAP1 and telomere structure regulate telomere position effects in Saccharomyces cerevisiae.

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30 October 2018

A trans-spliced leader sequence on actin mRNA in C. elegans

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30 October 2018

Immunochemical localization of myosin heavy chain isoforms and paramyosin in developmentally and structurally diverse muscle cell types of the nematode Caenorhabditis elegans

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30 October 2018

The conformation dependent hydrolysis of DNA by micrococcal nuclease

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based on heuristic

inferred from PubMed ID database lookup

Another potential artifact in the study of nucleosome phasing by chromatin digestion with micrococcal nuclease

1 reference

https://pubmed.ncbi.nlm.nih.gov/20691096

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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10.1186/1471-2164-11-465

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Europe PubMed Central

PubMed publication ID

28 July 2017

Dimensions Publication ID

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PMC publication ID

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Europe PubMed Central

PubMed publication ID

28 July 2017

PubMed publication ID

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Europe PubMed Central

PubMed publication ID

28 July 2017

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