Specificity shifts in the rRNA and tRNA nucleotide targets of archaeal and bacterial m5U methyltransferases. (Q33738594)

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15 January 2020

title

Specificity shifts in the rRNA and tRNA nucleotide targets of archaeal and bacterial m5U methyltransferases (English)

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15 January 2020

6

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15 January 2020

Stephen Douthwaite

8

1 reference

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15 January 2020

7

Henri Grosjean

1 reference

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15 January 2020

author name string

Sylvie Auxilien

1

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15 January 2020

Anette Rasmussen

2

1 reference

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15 January 2020

Simon Rose

3

1 reference

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15 January 2020

Clotilde Husson

5

1 reference

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15 January 2020

Céline Brochier-Armanet

4

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15 January 2020

language of work or name

English

0 references

publication date

4 November 2010

1 reference

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15 January 2020

1 reference

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15 January 2020

volume

17

1 reference

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15 January 2020

issue

1

1 reference

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15 January 2020

page(s)

45-53

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YgdE is the 2'-O-ribose methyltransferase RlmM specific for nucleotide C2498 in bacterial 23S rRNA.

15 January 2020

cites work

1 reference

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tRNAdb 2009: compilation of tRNA sequences and tRNA genes

28 July 2018

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Crystal structure of the Escherichia coli 23S rRNA:m5C methyltransferase RlmI (YccW) reveals evolutionary links between RNA modification enzymes

28 July 2018

1 reference

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YccW is the m5C methyltransferase specific for 23S rRNA nucleotide 1962.

28 July 2018

1 reference

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Structure of a TrmA-RNA complex: A consensus RNA fold contributes to substrate selectivity and catalysis in m5U methyltransferases

28 July 2018

1 reference

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Substitution of the use of radioactivity by fluorescence for biochemical studies of RNA.

28 July 2018

1 reference

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Archease from Pyrococcus abyssi improves substrate specificity and solubility of a tRNA m5C methyltransferase

28 July 2018

1 reference

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The single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction: twenty-something years on

28 July 2018

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Substrate recognition by RNA 5-methyluridine methyltransferases and pseudouridine synthases: a structural perspective

28 July 2018

1 reference

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Mg2+-RNA interaction free energies and their relationship to the folding of RNA tertiary structures

28 July 2018

1 reference

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Structure of the 70S ribosome complexed with mRNA and tRNA

28 July 2018

1 reference

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YebU is a m5C methyltransferase specific for 16 S rRNA nucleotide 1407.

28 July 2018

1 reference

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Identification of a novel gene encoding a flavin-dependent tRNA:m5U methyltransferase in bacteria--evolutionary implications

28 July 2018

1 reference

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Nanoarchaea: representatives of a novel archaeal phylum or a fast-evolving euryarchaeal lineage related to Thermococcales?

28 July 2018

1 reference

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A novel partial modification at C2501 in Escherichia coli 23S ribosomal RNA

28 July 2018

1 reference

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Decoding the genome: a modified view

28 July 2018

1 reference

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The COG database: an updated version includes eukaryotes

28 July 2018

1 reference

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Identifying the methyltransferases for m(5)U747 and m(5)U1939 in 23S rRNA using MALDI mass spectrometry

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004065

Structure of 23S rRNA hairpin 35 and its interaction with the tylosin-resistance methyltransferase RlmAII.

28 July 2018

1 reference

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rRNA modifications and ribosome function

28 July 2018

1 reference

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The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs

28 July 2018

1 reference

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Characterization of the 23 S ribosomal RNA m5U1939 methyltransferase from Escherichia coli

28 July 2018

1 reference

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High resolution structure of the large ribosomal subunit from a mesophilic eubacterium

28 July 2018

1 reference

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The complete atomic structure of the large ribosomal subunit at 2.4 A resolution

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004065

Identification of the TRM2 gene encoding the tRNA(m5U54)methyltransferase of Saccharomyces cerevisiae

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004065

Mapping posttranscriptional modifications in 5S ribosomal RNA by MALDI mass spectrometry

28 July 2018

1 reference

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A simple and efficient method to reduce nontemplated nucleotide addition at the 3 terminus of RNAs transcribed by T7 RNA polymerase

28 July 2018

1 reference

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Recognition of the T-arm of tRNA by tRNA (m5U54)-methyltransferase is not sequence specific

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004065

Enzymatic mechanism of tRNA (m5U54)methyltransferase

28 July 2018

1 reference

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Structure of ribosomal RNA

28 July 2018

1 reference

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New approach to the cultivation of methanogenic bacteria: 2-mercaptoethanesulfonic acid (HS-CoM)-dependent growth of Methanobacterium ruminantium in a pressureized atmosphere.

28 July 2018

1 reference

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Role of ribothymidine in the thermal stability of transfer RNA as monitored by proton magnetic resonance

28 July 2018

1 reference

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Acquisition of a bacterial RumA-type tRNA(uracil-54, C5)-methyltransferase by Archaea through an ancient horizontal gene transfer

28 July 2018

1 reference

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Expanding the nucleotide repertoire of the ribosome with post-transcriptional modifications

30 October 2018

1 reference

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Crystal structure of a 70S ribosome-tRNA complex reveals functional interactions and rearrangements

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004065

Structures of the bacterial ribosome at 3.5 A resolution

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004065

A unique RNA Fold in the RumA-RNA-cofactor ternary complex contributes to substrate selectivity and enzymatic function

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004065

The linkage between magnesium binding and RNA folding.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004065

Structural analysis of RNA using chemical and enzymatic probing monitored by primer extension

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004065

Comparative RNomics and modomics in Mollicutes: prediction of gene function and evolutionary implications

30 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21051506

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Purification of transfer RNA (m5U54)-methyltransferase from Escherichia coli. Association with RNA

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21051506

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1261/RNA.2323411

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21051506%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21051506%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

PubMed publication ID

21051506

1 reference