RNA-guided RNA modification: functional organization of the archaeal H/ACA RNP (Q33826941)

29 July 2017

title

RNA-guided RNA modification: functional organization of the archaeal H/ACA RNP (English)

1 reference

29 July 2017

Daniel L Baker

1

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29 July 2017

Osama A Youssef

2

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29 July 2017

Michael I R Chastkofsky

3

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29 July 2017

David A Dy

4

1 reference

29 July 2017

Rebecca M Terns

5

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29 July 2017

Michael P Terns

6

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29 July 2017

publication date

3 May 2005

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29 July 2017

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29 July 2017

volume

19

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29 July 2017

issue

10

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29 July 2017

page(s)

1238-1248

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Modified nucleotides at the 5' end of human U2 snRNA are required for spliceosomal E-complex formation

29 July 2017

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4 July 2018

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Pseudouridines in and near the branch site recognition region of U2 snRNA are required for snRNP biogenesis and pre-mRNA splicing in Xenopus oocytes

4 July 2018

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4 July 2018

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A common sequence motif determines the Cajal body-specific localization of box H/ACA scaRNAs.

4 July 2018

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Efficient RNA 2'-O-methylation requires juxtaposed and symmetrically assembled archaeal box C/D and C'/D' RNPs

4 July 2018

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4 July 2018

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4 July 2018

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4 July 2018

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Structure and function of archaeal box C/D sRNP core proteins

4 July 2018

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Binding of L7Ae protein to the K-turn of archaeal snoRNAs: a shared RNA binding motif for C/D and H/ACA box snoRNAs in Archaea

4 July 2018

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RNA-guided nucleotide modification of ribosomal and other RNAs

4 July 2018

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4 July 2018

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Noncoding RNA genes identified in AT-rich hyperthermophiles

4 July 2018

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Identification of 86 candidates for small non-messenger RNAs from the archaeon Archaeoglobus fulgidus.

4 July 2018

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Cajal body-specific small nuclear RNAs: a novel class of 2'-O-methylation and pseudouridylation guide RNAs

4 July 2018

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4 July 2018

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In vitro reconstitution and activity of a C/D box methylation guide ribonucleoprotein complex

4 July 2018

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4 July 2018

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Archaeal ribosomal protein L7 is a functional homolog of the eukaryotic 15.5kD/Snu13p snoRNP core protein

4 July 2018

1 reference

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Cocrystal structure of a tRNA Psi55 pseudouridine synthase: nucleotide flipping by an RNA-modifying enzyme

4 July 2018

1 reference

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The kink-turn: a new RNA secondary structure motif

4 July 2018

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THUMP--a predicted RNA-binding domain shared by 4-thiouridine, pseudouridine synthases and RNA methylases

4 July 2018

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Internal modification of U2 small nuclear (sn)RNA occurs in nucleoli of Xenopus oocytes

4 July 2018

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Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization

4 July 2018

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A common core RNP structure shared between the small nucleoar box C/D RNPs and the spliceosomal U4 snRNP

4 July 2018

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Pseudouridine in RNA: what, where, how, and why

4 July 2018

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Evolutionary appearance of genes encoding proteins associated with box H/ACA snoRNAs: cbf5p in Euglena gracilis, an early diverging eukaryote, and candidate Gar1p and Nop10p homologs in archaebacteria

4 July 2018

1 reference

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Homologs of small nucleolar RNAs in Archaea

4 July 2018

1 reference

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In vitro assembly of human H/ACA small nucleolar RNPs reveals unique features of U17 and telomerase RNAs

4 July 2018

1 reference

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Crystal structure of a fibrillarin homologue from Methanococcus jannaschii, a hyperthermophile, at 1.6 A resolution

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1132009

Point mutations in yeast CBF5 can abolish in vivo pseudouridylation of rRNA

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1132009

Role of the box C/D motif in localization of small nucleolar RNAs to coiled bodies and nucleoli

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1132009

Elements essential for accumulation and function of small nucleolar RNAs directing site-specific pseudouridylation of ribosomal RNAs

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1132009

Cbf5p, a potential pseudouridine synthase, and Nhp2p, a putative RNA-binding protein, are present together with Gar1p in all H BOX/ACA-motif snoRNPs and constitute a common bipartite structure.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1132009

Nhp2p and Nop10p are essential for the function of H/ACA snoRNPs

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1132009

Modifications of U2 snRNA are required for snRNP assembly and pre-mRNA splicing

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1132009

X-linked dyskeratosis congenita is caused by mutations in a highly conserved gene with putative nucleolar functions

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1132009

The box H + ACA snoRNAs carry Cbf5p, the putative rRNA pseudouridine synthase

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1132009

A small nucleolar RNP protein is required for pseudouridylation of eukaryotic ribosomal RNAs

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1132009

Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1132009

The family of box ACA small nucleolar RNAs is defined by an evolutionarily conserved secondary structure and ubiquitous sequence elements essential for RNA accumulation

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1132009

Targeted ribose methylation of RNA in vivo directed by tailored antisense RNA guides

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1132009

The RNA world of the nucleolus: two major families of small RNAs defined by different box elements with related functions

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1132009

Pseudouridine synthases: four families of enzymes containing a putative uridine-binding motif also conserved in dUTPases and dCTP deaminases

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1132009

Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1132009

An essential yeast protein, CBF5p, binds in vitro to centromeres and microtubules

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1132009

NAP57, a mammalian nucleolar protein with a putative homolog in yeast and bacteria

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1132009

The numerous modified nucleotides in eukaryotic ribosomal RNA

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1132009

The archaeal sRNA binding protein L7Ae has a 3D structure very similar to that of its eukaryal counterpart while having a broader RNA-binding specificity.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1132009

Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse cellular functions

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1132009

Archaeal guide RNAs function in rRNA modification in the eukaryotic nucleus

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1132009

29 October 2018

Identifiers

DOI

10.1101/GAD.1309605

1 reference

29 July 2017

1 reference

29 July 2017

1 reference