Evaluation and improvement of multiple sequence methods for protein secondary structure prediction. (Q33855340)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10081963%20AND%20SRC:MED&resulttype=core&format=json

12 November 2019

title

Evaluation and improvement of multiple sequence methods for protein secondary structure prediction (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10081963%20AND%20SRC:MED&resulttype=core&format=json

protein structure prediction

12 November 2019

main subject

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2

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12 November 2019

author name string

J A Cuff

series ordinal

1

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12 November 2019

language of work or name

English

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publication date

1 March 1999

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12 November 2019

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12 November 2019

volume

34

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12 November 2019

issue

4

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12 November 2019

page(s)

508-519

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Modelling mutations and homologous proteins

12 November 2019

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Assessing sequence comparison methods with reliable structurally identified distant evolutionary relationships

21 January 2018

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Profile analysis: detection of distantly related proteins

21 January 2018

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A strategy for the rapid multiple alignment of protein sequences. Confidence levels from tertiary structure comparisons

21 January 2018

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21 January 2018

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Intermediate sequences increase the detection of homology between sequences

21 January 2018

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A new approach to protein fold recognition

21 January 2018

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Protein structure prediction by threading methods: evaluation of current techniques

21 January 2018

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An SH2-SH3 domain hybrid.

21 January 2018

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Protein fold recognition by mapping predicted secondary structures.

21 January 2018

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Protein fold recognition by prediction-based threading

21 January 2018

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Conformational parameters for amino acids in helical, beta-sheet, and random coil regions calculated from proteins

21 January 2018

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Analysis of the accuracy and implications of simple methods for predicting the secondary structure of globular proteins

21 January 2018

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How good are predictions of protein secondary structure?

21 January 2018

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Prediction of secondary structure by evolutionary comparison: application to the alpha subunit of tryptophan synthase

21 January 2018

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Amino acid sequence analysis of the annexin super-gene family of proteins

21 January 2018

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Conservation analysis and structure prediction of the SH2 family of phosphotyrosine binding domains

21 January 2018

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Patterns of divergence in homologous proteins as indicators of secondary and tertiary structure: a prediction of the structure of the catalytic domain of protein kinases

21 January 2018

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Prediction of protein secondary structure and active sites using the alignment of homologous sequences

21 January 2018

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Prediction of protein secondary structure at better than 70% accuracy

21 January 2018

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Seventy-five percent accuracy in protein secondary structure prediction

21 January 2018

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Identification and application of the concepts important for accurate and reliable protein secondary structure prediction

21 January 2018

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Prediction of protein secondary structure by combining nearest-neighbor algorithms and multiple sequence alignments

21 January 2018

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Secondary structure prediction: combination of three different methods.

21 January 2018

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Hybrid system for protein secondary structure prediction

21 January 2018

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Predicting protein secondary structure based on amino acid sequence

21 January 2018

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Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

21 January 2018

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Identification of structural motifs from protein coordinate data: secondary structure and first-level supersecondary structure

21 January 2018

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Knowledge-based protein secondary structure assignment

21 January 2018

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Secondary structure prediction for modelling by homology.

21 January 2018

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Database of homology-derived protein structures and the structural meaning of sequence alignment

21 January 2018

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Aligning amino acid sequences: Comparison of commonly used methods

21 January 2018

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A general method applicable to the search for similarities in the amino acid sequence of two proteins

21 January 2018

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Evaluation and improvements in the automatic alignment of protein sequences.

21 January 2018

1 reference

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Three-dimensional structure of the complex between pancreatic secretory trypsin inhibitor (Kazal type) and trypsinogen at 1.8 Å resolution

21 January 2018

1 reference

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Refinement of a molecular model for lamprey hemoglobin from Petromyzon marinus

21 January 2018

1 reference

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Refined crystal structure of calcium-liganded carp parvalbumin 4.25 at 1.5-A resolution

21 January 2018

1 reference

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Substrate specificity and affinity of a protein modulated by bound water molecules

21 January 2018

1 reference

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Incorporation of non-local interactions in protein secondary structure prediction from the amino acid sequence.

21 January 2018

1 reference

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Basic local alignment search tool

21 January 2018

1 reference

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Identification of common molecular subsequences

21 January 2018

1 reference

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ALSCRIPT: a tool to format multiple sequence alignments

21 January 2018

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

21 January 2018

1 reference

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Redefining the goals of protein secondary structure prediction

21 January 2018

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A Method to Identify Protein Sequences That Fold into a Known Three-Dimensional Structure

21 January 2018

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The classification of amino acid conservation.

21 January 2018

1 reference

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Prediction of chain turns in globular proteins on a hydrophobic basis

21 January 2018

1 reference

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Analysis and prediction of the different types of beta-turn in proteins

21 January 2018

1 reference

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Describing protein structure: a general algorithm yielding complete helicoidal parameters and a unique overall axis.

21 January 2018

1 reference

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Exploring the limits of nearest neighbour secondary structure prediction.

21 January 2018

1 reference

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SOPM: a self-optimized method for protein secondary structure prediction

21 January 2018

1 reference

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GOR method for predicting protein secondary structure from amino acid sequence.

21 January 2018

1 reference

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Structure of erythrocruorin in different ligand states refined at 1·4 Å resolution

21 January 2018

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High-resolution crystallographic analysis of a co-operative dimeric hemoglobin

21 January 2018

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Structure of calmodulin refined at 2.2 A resolution

21 January 2018

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Sugar and signal-transducer binding sites of the Escherichia coli galactose chemoreceptor protein

21 January 2018

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Crystallographic refinement of Japanese quail ovomucoid, a Kazal-type inhibitor, and model building studies of complexes with serine proteases

21 January 2018

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[25] Protein multiple sequence alignment and flexible pattern matching

21 January 2018

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[29] Identification of functional residues and secondary structure from protein multiple sequence alignment

21 January 2018

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Crystal structure of a retroviral protease proves relationship to aspartic protease family

21 January 2018

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10.1002/(SICI)1097-0134(19990301)34:4<508::AID-PROT10>3.0.CO;2-4

21 January 2018

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DOI

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12 November 2019

1 reference