Sampling motifs on phylogenetic trees (Q33868803)

29 July 2017

title

Sampling motifs on phylogenetic trees (English)

1 reference

29 July 2017

1 reference

Xiaoman Li

1

1 reference

29 July 2017

Wing H Wong

series ordinal

2

1 reference

29 July 2017

language of work or name

English

0 references

publication date

27 June 2005

1 reference

Proceedings of the National Academy of Sciences of the United States of America

29 July 2017

published in

1 reference

29 July 2017

volume

102

1 reference

29 July 2017

issue

27

1 reference

29 July 2017

page(s)

9481-9486

1 reference

describes a project that uses

29 July 2017

Bayes' theorem

1 reference

18 June 2022

https://europepmc.org/article/PMC/1160516

based on heuristic

inferred from PubMed Central ID database lookup

maintained by WikiProject

WikiProject Mathematics

0 references

cites work

PhyME: a probabilistic algorithm for finding motifs in sets of orthologous sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160516

Transcriptional regulatory code of a eukaryotic genome

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160516

Eukaryotic regulatory element conservation analysis and identification using comparative genomics

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160516

Motif discovery in heterogeneous sequence data.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160516

Combining phylogenetic data with co-regulated genes to identify regulatory motifs

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160516

Position specific variation in the rate of evolution in transcription factor binding sites

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160516

FootPrinter: A program designed for phylogenetic footprinting

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160516

Finding Functional Features in Saccharomyces Genomes by Phylogenetic Footprinting

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160516

Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160516

TRANSFAC: a database on transcription factors and their DNA binding sites

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160516

A Hidden Markov Model approach to variation among sites in rate of evolution

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160516

Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160516

Fitting a mixture model by expectation maximization to discover motifs in biopolymers

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160516

Equation of State Calculations by Fast Computing Machines

28 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.0501620102

Phylogenetic motif detection by expectation-maximization on evolutionary mixtures

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160516

BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160516

Finding composite regulatory patterns in DNA sequences

29 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15983378

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0501620102

1 reference

29 July 2017

0 references

1 reference

29 July 2017

1 reference