MethylCoder: software pipeline for bisulfite-treated sequences (Q33949302)

30 July 2017

title

MethylCoder: software pipeline for bisulfite-treated sequences (English)

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30 July 2017

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Tzung-Fu Hsieh

2

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ORCID Public Data File 2021

author name string

Brent Pedersen

series ordinal

1

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30 July 2017

Christian Ibarra

series ordinal

3

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30 July 2017

Robert L Fischer

series ordinal

4

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30 July 2017

language of work or name

English

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publication date

30 June 2011

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30 July 2017

number of pages

2

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based on heuristic

inferred from page(s)

published in

Bioinformatics

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30 July 2017

volume

27

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30 July 2017

issue

17

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30 July 2017

page(s)

2435-2436

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Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications.

30 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3157921

Introduction into the analysis of high-throughput-sequencing based epigenome data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3157921

Fast and SNP-tolerant detection of complex variants and splicing in short reads

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3157921

BRAT: bisulfite-treated reads analysis tool

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3157921

BSMAP: whole genome bisulfite sequence MAPping program

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3157921

The Sequence Alignment/Map format and SAMtools

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3157921

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3157921

Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3157921

BS Seeker: precise mapping for bisulfite sequencing

28 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR394

10.1093/BIOINFORMATICS/BTR394

21 January 2018

Identifiers

DOI

1 reference

journals/bioinformatics/PedersenHIF11

30 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

30 July 2017

1 reference