Thermodynamic and kinetic analyses for understanding sequence-specific DNA recognition (Q33962142)

30 July 2017

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title

Thermodynamic and kinetic analyses for understanding sequence-specific DNA recognition (English)

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30 July 2017

Oda M

1

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30 July 2017

Nakamura H

series ordinal

2

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30 July 2017

publication date

1 May 2000

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30 July 2017

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30 July 2017

volume

5

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30 July 2017

issue

5

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30 July 2017

page(s)

319-326

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Minor groove-binding architectural proteins: structure, function, and DNA recognition.

30 July 2017

cites work

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2443.2000.00335.X

Win some, lose some: enthalpy-entropy compensation in weak intermolecular interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2443.2000.00335.X

Thermodynamics of the interactions of lac repressor with variants of the symmetric lac operator: effects of converting a consensus site to a non-specific site.

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2443.2000.00335.X

ProTherm: Thermodynamic Database for Proteins and Mutants.

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2443.2000.00335.X

Thermodynamics of sequence-specific protein-DNA interactions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2443.2000.00335.X

The salt dependence of DNA recognition by NF-kappaB p50: a detailed kinetic analysis of the effects on affinityand specificity

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2443.2000.00335.X

Thermodynamic evaluation of binding interactions in the methionine repressor system of Escherichia coli using isothermal titration calorimetry.

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2443.2000.00335.X

A structural basis for recognition of A.T and T.A base pairs in the minor groove of B-DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2443.2000.00335.X

Getting a handhold on DNA: design of poly-zinc finger proteins with femtomolar dissociation constants.

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2443.2000.00335.X

Adenine base unstacking dominates the observed enthalpy and heat capacity changes for the Escherichia coli SSB tetramer binding to single-stranded oligoadenylates

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2443.2000.00335.X

Thermodynamics of the DNA binding reaction of transcription factor MASH-1

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2443.2000.00335.X

A thermodynamic study of the trp repressor-operator interaction

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2443.2000.00335.X

Crystal structure of the lactose operon repressor and its complexes with DNA and inducer

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2443.2000.00335.X

Sequence-specific DNA-binding dominated by dehydration

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2443.2000.00335.X

Structure-based prediction of binding affinities and molecular design of peptide ligands.

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2443.2000.00335.X

The name is bond--H bond.

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2443.2000.00335.X

Enhanced protein thermostability from site-directed mutations that decrease the entropy of unfolding

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2443.2000.00335.X

Identification of indispensable residues for specific DNA-binding in the imperfect tandem repeats of c-Myb R2R3.

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2443.2000.00335.X

Thermodynamics of specific and non-specific DNA binding by the c-Myb DNA-binding domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2443.2000.00335.X

Solution structure of a specific DNA complex of the Myb DNA-binding domain with cooperative recognition helices

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2443.2000.00335.X

Comparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2443.2000.00335.X

Hydration and heat stability effects on protein unfolding

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2443.2000.00335.X

Probing the molecular mechanism of action of co-repressor in the E. coli methionine repressor-operator complex using surface plasmon resonance (SPR).

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2443.2000.00335.X

Ion effects on ligand-nucleic acid interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2443.2000.00335.X

16 Analysis of equilibrium and kinetic measurements to determine thermodynamic origins of stability and specificity and mechanism of formation of site-specific complexes between proteins and helical DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2443.2000.00335.X

Characterization of charge change super-repressor mutants of trp repressor: effects on oligomerization conformation, ligation and stability.

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2443.2000.00335.X

Non-additivity of sequence-specific enzyme-DNA interactions in the EcoRI DNA methyltransferase

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2443.2000.00335.X

Lambda repressor recognizes the approximately 2-fold symmetric half-operator sequences asymmetrically

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2443.2000.00335.X

Origins of DNA-binding specificity: role of protein contacts with the DNA backbone

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2443.2000.00335.X

Kinetics of binding of Antp homeodomain to DNA analyzed by measurements of surface plasmon resonance

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2443.2000.00335.X

Coupling of local folding to site-specific binding of proteins to DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2443.2000.00335.X

Use of liquid hydrocarbon and amide transfer data to estimate contributions to thermodynamic functions of protein folding from the removal of nonpolar and polar surface from water

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2443.2000.00335.X

Heat capacity and entropy changes in processes involving proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2443.2000.00335.X

Analysis of the sequence-specific interactions between Cro repressor and operator DNA by systematic base substitution experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2443.2000.00335.X

Recognition of specific DNA sequences by the c-myb protooncogene product: role of three repeat units in the DNA-binding domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2443.2000.00335.X

Thermodynamic characterization of non-sequence-specific DNA-binding by the Sso7d protein from Sulfolobus solfataricus

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1365-2443.2000.00335.X

10.1046/J.1365-2443.2000.00335.X

21 January 2018

Identifiers

DOI

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30 July 2017

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