Whole genome expression array profiling highlights differences in mucosal defense genes in Barrett's esophagus and esophageal adenocarcinoma (Q33987679)

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English	Whole genome expression array profiling highlights differences in mucosal defense genes in Barrett's esophagus and esophageal adenocarcinoma	scientific article

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scholarly article

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Europe PubMed Central

PubMed publication ID

30 July 2017

Whole genome expression array profiling highlights differences in mucosal defense genes in Barrett's esophagus and esophageal adenocarcinoma (English)

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

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based on heuristic

inferred from title

Barrett's esophagus

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whole genome sequencing

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based on heuristic

inferred from title

5

object named as

Paul A Drew

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Europe PubMed Central

PubMed publication ID

30 July 2017

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Nicholas Hayward

8

object named as

Nicholas K Hayward

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Europe PubMed Central

PubMed publication ID

30 July 2017

author name string

Derek J Nancarrow

1

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Europe PubMed Central

PubMed publication ID

30 July 2017

Andrew D Clouston

2

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Europe PubMed Central

PubMed publication ID

30 July 2017

B Mark Smithers

3

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

David C Gotley

4

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

David I Watson

6

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

Sonika Tyagi

7

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

David C Whiteman

9

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

Australian Cancer Study

10

1 reference

Europe PubMed Central

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30 July 2017

Study of Digestive Health

11

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Europe PubMed Central

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30 July 2017

language of work or name

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publication date

28 July 2011

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Europe PubMed Central

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30 July 2017

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Europe PubMed Central

PubMed publication ID

30 July 2017

6

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

7

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

e22513

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

copyright license

Creative Commons Attribution 4.0 International

28 July 2011

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April 2022 Public Data File from Crossref

copyright status

0 references

No further increase in the incidence of esophageal adenocarcinoma in Sweden

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145652

5 July 2018

Cigarette smoking and adenocarcinomas of the esophagus and esophagogastric junction: a pooled analysis from the international BEACON consortium

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145652

5 July 2018

Genome-wide catalogue of chromosomal aberrations in barrett's esophagus and esophageal adenocarcinoma: a high-density single nucleotide polymorphism array analysis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145652

5 July 2018

Barrett's oesophagus and oesophageal adenocarcinoma: time for a new synthesis

1 reference

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5 July 2018

Stromal genes discriminate preinvasive from invasive disease, predict outcome, and highlight inflammatory pathways in digestive cancers

1 reference

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5 July 2018

A re-annotation pipeline for Illumina BeadArrays: improving the interpretation of gene expression data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145652

5 July 2018

Gastro-oesophageal reflux symptoms and the risks of oesophageal cancer: are the effects modified by smoking, NSAIDs or acid suppressants?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145652

5 July 2018

Oesophageal cancer incidence in the United States by race, sex, and histologic type, 1977-2005

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145652

5 July 2018

Chromosomal instability and copy number alterations in Barrett's esophagus and esophageal adenocarcinoma

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145652

5 July 2018

Gene expression in Barrett's esophagus: laser capture versus whole tissue

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145652

5 July 2018

Single nucleotide polymorphism-based genome-wide chromosome copy change, loss of heterozygosity, and aneuploidy in Barrett's esophagus neoplastic progression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145652

5 July 2018

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145652

5 July 2018

Cell proliferation, cell cycle abnormalities, and cancer outcome in patients with Barrett's esophagus: a long-term prospective study.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145652

5 July 2018

Cdx1 and c-Myc foster the initiation of transdifferentiation of the normal esophageal squamous epithelium toward Barrett's esophagus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145652

5 July 2018

Expression analysis of Barrett's esophagus-associated high-grade dysplasia in laser capture microdissected archival tissue

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145652

5 July 2018

Incidence of adenocarcinoma of the esophagus among white Americans by sex, stage, and age.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145652

5 July 2018

The HGNC Database in 2008: a resource for the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145652

5 July 2018

Transcriptional oncogenomic hot spots in Barrett's adenocarcinomas: serial analysis of gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145652

5 July 2018

Mucin expression profile in Barrett's, dysplasia, adenocarcinoma sequence in the esophagus.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145652

5 July 2018

Gene expression profiling of esophageal cancer: comparative analysis of Barrett's esophagus, adenocarcinoma, and squamous cell carcinoma

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145652

5 July 2018

Molecular basis of Barrett's oesophagus and oesophageal adenocarcinoma

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145652

5 July 2018

Gene expression profiling reveals stromal genes expressed in common between Barrett's esophagus and adenocarcinoma

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145652

5 July 2018

Esophagitis: incidence and risk of esophageal adenocarcinoma--a population-based cohort study

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145652

5 July 2018

Transcriptional profiling suggests that Barrett's metaplasia is an early intermediate stage in esophageal adenocarcinogenesis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145652

5 July 2018

Interactions among smoking, obesity, and symptoms of acid reflux in Barrett's esophagus.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145652

5 July 2018

A comparative analysis by SAGE of gene expression profiles of Barrett's esophagus, normal squamous esophagus, and gastric cardia

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145652

5 July 2018

A systematic review and meta-analysis of the sex ratio for Barrett's esophagus, erosive reflux disease, and nonerosive reflux disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145652

5 July 2018

Altered expression of TFF-1 and CES-2 in Barrett's Esophagus and associated adenocarcinomas

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145652

5 July 2018

Finishing the euchromatic sequence of the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145652

5 July 2018

Gene expression profiling in Barrett's esophagus and cardia intestinal metaplasia: a comparative analysis using cDNA microarray

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145652

5 July 2018

Risk of oesophageal cancer in Barrett's oesophagus and gastro-oesophageal reflux

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145652

5 July 2018

ACID: a database for microarray clone information

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145652

5 July 2018

Characterisation of p53 status at the gene, chromosomal and protein levels in oesophageal adenocarcinoma.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145652

5 July 2018

DAVID: Database for Annotation, Visualization, and Integrated Discovery

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145652

5 July 2018

Mucin gene expression in Barrett's oesophagus: an in situ hybridisation and immunohistochemical study

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145652

5 July 2018

The human trefoil peptide, TFF1, is present in different molecular forms that are intimately associated with mucus in normal stomach

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145652

5 July 2018

Clonal expansion and loss of heterozygosity at chromosomes 9p and 17p in premalignant esophageal (Barrett's) tissue

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145652

5 July 2018

Carbonic anhydrase isoenzymes I, II, III, and IV are present in human esophageal epithelium

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145652

5 July 2018

Gastric mucosa abnormalities and tumorigenesis in mice lacking the pS2 trefoil protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145652

5 July 2018

Prognostic value of p53 in Barrett's oesophagus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145652

5 July 2018

Specialized metaplastic columnar epithelium in Barrett's esophagus. A comparative transmission electron microscopic study.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145652

5 July 2018

Esophageal adenocarcinoma incidence: are we reaching the peak?

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0022513

21 January 2018

Current and past smoking significantly increase risk for Barrett's esophagus.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0022513

21 January 2018

Transcriptional analyses of Barrett's metaplasia and normal upper GI mucosae

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0022513

21 January 2018

Comparison of kinome profiles of Barrett's esophagus with normal squamous esophagus and normal gastric cardia.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0022513

21 January 2018

Esophageal mucin: an adherent mucus gel barrier is absent in the normal esophagus but present in columnar-lined Barrett's esophagus

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0022513

21 January 2018

The adherent gastric mucous layer is composed of alternating layers of MUC5AC and MUC6 mucin proteins

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0022513

21 January 2018

A stable and sensitive testing system for potential carcinogens based on DNA damage-induced gene expression in human HepG2 cell

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0022513

21 January 2018

Mutations of p53 in Barrett's esophagus and Barrett's cancer: a prospective study of ninety-eight cases.

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0022513

21 January 2018

Adenocarcinoma of the oesophagus: incidence and survival rates in New South Wales, 1972-2005.

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145652

29 October 2018

Progression of Barrett's metaplasia to adenocarcinoma is associated with the suppression of the transcriptional programs of epidermal differentiation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3145652

29 October 2018

Genome-Wide Copy Number Analysis in Esophageal Adenocarcinoma Using High-Density Single-Nucleotide Polymorphism Arrays

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0022513

21 January 2018

Inducible nitric oxide synthase, nitrotyrosine and p53 mutations in the molecular pathogenesis of Barrett's esophagus and esophageal adenocarcinoma

1 reference

https://pubmed.ncbi.nlm.nih.gov/21829465

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Global gene expression profiling in Barrett's esophagus and esophageal cancer: a comparative analysis using cDNA microarrays

1 reference

https://pubmed.ncbi.nlm.nih.gov/21829465

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular defense mechanisms of Barrett's metaplasia estimated by an integrative genomics

1 reference

https://pubmed.ncbi.nlm.nih.gov/21829465

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Expression Profile of Malignant and Nonmalignant Lesions of Esophagus and Stomach: Differential Activity of Functional Modules Related to Inflammation and Lipid Metabolism

1 reference

https://pubmed.ncbi.nlm.nih.gov/21829465

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Correlation of ultrastructural aberrations with dysplasia and flow cytometric abnormalities in Barrett's epithelium

1 reference

https://pubmed.ncbi.nlm.nih.gov/21829465

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Dedifferentiation precedes invasion in the progression from Barrett's metaplasia to esophageal adenocarcinoma

1 reference

https://pubmed.ncbi.nlm.nih.gov/21829465

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genome-wide analysis of genetic alterations in Barrett's adenocarcinoma using single nucleotide polymorphism arrays

1 reference

https://pubmed.ncbi.nlm.nih.gov/21829465

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Electrical parameters and ion species for active transport in human esophageal stratified squamous epithelium and Barrett's specialized columnar epithelium

1 reference

https://pubmed.ncbi.nlm.nih.gov/21829465

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Large intra- and inter-individual variability of genes expression levels limits potential predictive value of molecular diagnosis of dysplasia in Barrett's esophagus

1 reference

https://pubmed.ncbi.nlm.nih.gov/21829465

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Gastric-type mucin and TFF-peptide expression in Barrett's oesophagus is disturbed during increased expression of MUC2

1 reference

https://pubmed.ncbi.nlm.nih.gov/21829465

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PONE.0022513

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

2011PLoSO...622513N

0 references

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

ResearchGate publication ID

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