Phylogenetic analysis of plant basic helix-loop-helix proteins (Q44857812)

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scientific article published in June 2003

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English	Phylogenetic analysis of plant basic helix-loop-helix proteins	scientific article published in June 2003

Statements

instance of

scholarly article

1 reference

stated in

Europe PubMed Central

PubMed publication ID

12911037

retrieved

6 December 2017

title

Phylogenetic analysis of plant basic helix-loop-helix proteins (English)

1 reference

stated in

Europe PubMed Central

PubMed publication ID

12911037

retrieved

6 December 2017

main subject

phylogenetics

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based on heuristic

inferred from title

author name string

Michael J Buck

series ordinal

1

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stated in

Europe PubMed Central

PubMed publication ID

12911037

retrieved

6 December 2017

William R Atchley

series ordinal

2

1 reference

stated in

Europe PubMed Central

PubMed publication ID

12911037

retrieved

6 December 2017

publication date

1 June 2003

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stated in

Europe PubMed Central

PubMed publication ID

12911037

retrieved

6 December 2017

published in

Journal of Molecular Evolution

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stated in

Europe PubMed Central

PubMed publication ID

12911037

retrieved

6 December 2017

volume

56

1 reference

stated in

Europe PubMed Central

PubMed publication ID

12911037

retrieved

6 December 2017

issue

6

1 reference

stated in

Europe PubMed Central

PubMed publication ID

12911037

retrieved

6 December 2017

page(s)

742-750

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Europe PubMed Central

PubMed publication ID

12911037

retrieved

6 December 2017

cites work

Phytochrome-interacting factors

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/12911037

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12 December 2020

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Recognition by Max of its cognate DNA through a dimeric b/HLH/Z domain

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/12911037

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

GL3 encodes a bHLH protein that regulates trichome development in arabidopsis through interaction with GL1 and TTG1.

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/12911037

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Functional characterization of DNA-binding domains of the subunits of the heterodimeric aryl hydrocarbon receptor complex imputing novel and canonical basic helix-loop-helix protein-DNA interactions.

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/12911037

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The helix-loop-helix domain: a common motif for bristles, muscles and sex.

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/12911037

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular evidence for an ancient duplication of the entire yeast genome

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/12911037

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular evolution of the plant R regulatory gene family

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/12911037

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The neighbor-joining method: a new method for reconstructing phylogenetic trees

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/12911037

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evidence for direct activation of an anthocyanin promoter by the maize C1 protein and comparison of DNA binding by related Myb domain proteins

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/12911037

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

RAP-1 is an Arabidopsis MYC-like R protein homologue, that binds to G-box sequence motifs.

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/12911037

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12 December 2020

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inferred from PubMed ID database lookup

The TRANSPARENT TESTA GLABRA1 locus, which regulates trichome differentiation and anthocyanin biosynthesis in Arabidopsis, encodes a WD40 repeat protein.

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/12911037

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

PCF1 and PCF2 specifically bind to cis elements in the rice proliferating cell nuclear antigen gene

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/12911037

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12 December 2020

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inferred from PubMed ID database lookup

Plant bZIP proteins gather at ACGT elements

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/12911037

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12 December 2020

based on heuristic

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The function of hairy-related bHLH repressor proteins in cell fate decisions

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/12911037

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

REP1, a basic helix-loop-helix protein, is required for a branch pathway of phytochrome A signaling in arabidopsis

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/12911037

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12 December 2020

based on heuristic

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Phenylpropanoid biosynthesis and its regulation

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/12911037

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The R2R3-MYB gene family in Arabidopsis thaliana

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/12911037

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12 December 2020

based on heuristic

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Amino acid substitution matrices from protein blocks

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/12911037

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Muscle basic helix-loop-helix proteins and the regulation of myogenesis

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/12911037

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. indica)

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/12911037

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular evolution of the Myb family of transcription factors: evidence for polyphyletic origin

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/12911037

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterization of an ammonium transport protein from the peribacteroid membrane of soybean nodules

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/12911037

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolution of bHLH transcription factors: modular evolution by domain shuffling?

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/12911037

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Helix-loop-helix proteins: regulators of transcription in eucaryotic organisms

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/12911037

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

HAND proteins: molecular mediators of cardiac development and congenital heart disease

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/12911037

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Direct targeting of light signals to a promoter element-bound transcription factor.

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/12911037

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12 December 2020

based on heuristic

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Seeing double: appreciating genetic redundancy

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/12911037

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Arabidopsis myc/bHLH gene ALCATRAZ enables cell separation in fruit dehiscence

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/12911037

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Expression cloning in Fe2+ transport defective yeast of a novel maize MYC transcription factor

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/12911037

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

bHLH transcription factors and mammalian neuronal differentiation

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/12911037

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A common gene regulates pigmentation pattern in diverse plant species

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/12911037

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12 December 2020

based on heuristic

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DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/12911037

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A bHLH transcription factor mediates organ, region and flower type specific signals on dihydroflavonol-4-reductase (dfr) gene expression in the inflorescence of Gerbera hybrida (Asteraceae).

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/12911037

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The probability of duplicate gene preservation by subfunctionalization

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/12911037

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The rice R gene family: two distinct subfamilies containing several miniature inverted-repeat transposable elements

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/12911037

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Functional analysis of the transcriptional activator encoded by the maize B gene: evidence for a direct functional interaction between two classes of regulatory proteins

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/12911037

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The basic helix-loop-helix protein family: comparative genomics and phylogenetic analysis

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/12911037

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A natural classification of the basic helix-loop-helix class of transcription factors

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/12911037

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolutionary dynamics of duplicated genes in plants.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/12911037

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

SPATULA, a gene that controls development of carpel margin tissues in Arabidopsis, encodes a bHLH protein.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/12911037

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterization of the human and mouse HEY1, HEY2, and HEYL genes: cloning, mapping, and mutation screening of a new bHLH gene family

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/12911037

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Phylogenetic analysis of the human basic helix-loop-helix proteins

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/12911037

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The bHLH gene Hes1 regulates differentiation of multiple cell types

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/12911037

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MYB transcription factors in plants

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/12911037

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The role of lineage-specific gene family expansion in the evolution of eukaryotes

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/12911037

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

anthocyanin1 of petunia encodes a basic helix-loop-helix protein that directly activates transcription of structural anthocyanin genes.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/12911037

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Positional dependence, cliques, and predictive motifs in the bHLH protein domain

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/12911037

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/12911037

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

DOI

10.1007/S00239-002-2449-3

1 reference

stated in

Europe PubMed Central

PubMed publication ID

12911037

retrieved

6 December 2017

PubMed publication ID

12911037

1 reference

stated in

Europe PubMed Central

PubMed publication ID

12911037

retrieved

6 December 2017

ResearchGate publication ID

10619621

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