ENPDA: an evolutionary structure-based de novo peptide design algorithm. (Q46788954)

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scientific article published in August 2005

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English	ENPDA: an evolutionary structure-based de novo peptide design algorithm.	scientific article published in August 2005

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Europe PubMed Central

PubMed publication ID

16267689

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16267689%20AND%20SRC:MED&resulttype=core&format=json

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8 January 2020

title

ENPDA: an evolutionary structure-based de novo peptide design algorithm (English)

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Europe PubMed Central

PubMed publication ID

16267689

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8 January 2020

author

Sergio Madurga

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2

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PubMed publication ID

16267689

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Ernesto Nicolas

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7

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PubMed publication ID

16267689

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8 January 2020

Ernest Giralt i Lledó

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8

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PubMed publication ID

16267689

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8 January 2020

Teresa Tarragó

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5

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Teresa Tarragó

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16267689

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8 January 2020

Ignasi Belda

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1

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Ignasi Belda

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Europe PubMed Central

PubMed publication ID

16267689

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8 January 2020

Xavier Llorà

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3

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Xavier Llorà

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Europe PubMed Central

PubMed publication ID

16267689

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8 January 2020

author name string

Marc Martinell

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4

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PubMed publication ID

16267689

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8 January 2020

Mireia G Piqueras

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6

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PubMed publication ID

16267689

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8 January 2020

publication date

1 August 2005

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PubMed publication ID

16267689

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16267689%20AND%20SRC:MED&resulttype=core&format=json

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8 January 2020

published in

Journal of Computer - Aided Molecular Design

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Europe PubMed Central

PubMed publication ID

16267689

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16267689%20AND%20SRC:MED&resulttype=core&format=json

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8 January 2020

volume

19

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Europe PubMed Central

PubMed publication ID

16267689

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16267689%20AND%20SRC:MED&resulttype=core&format=json

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8 January 2020

issue

8

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Europe PubMed Central

PubMed publication ID

16267689

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16267689%20AND%20SRC:MED&resulttype=core&format=json

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8 January 2020

page(s)

585-601

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Europe PubMed Central

PubMed publication ID

16267689

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16267689%20AND%20SRC:MED&resulttype=core&format=json

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8 January 2020

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Can we learn to distinguish between "drug-like" and "nondrug-like" molecules?

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https://pubmed.ncbi.nlm.nih.gov/16267689

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Higher serum prolyl endopeptidase activity in patients with post-traumatic stress disorder

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Refined solution structure of the oligomerization domain of the tumour suppressor p53

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The Protein Data Bank

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12 December 2020

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PRO_LIGAND: an approach to de novo molecular design. 4. Application to the design of peptides

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https://pubmed.ncbi.nlm.nih.gov/16267689

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12 December 2020

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SPROUT: recent developments in the de novo design of molecules

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16267689

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12 December 2020

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Analysis of protein-protein interaction sites using surface patches

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/16267689

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12 December 2020

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The role of tetramerization in p53 function

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12 December 2020

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Quantitative structure/property relationship analysis of Caco-2 permeability using a genetic algorithm-based partial least squares method

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Structural Comparison of Allogeneic and Syngeneic T Cell Receptor–Peptide-Major Histocompatibility Complex Complexes

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12 December 2020

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Computer design of bioactive molecules: a method for receptor-based de novo ligand design

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Distribution of prolyl oligopeptidase in human peripheral tissues and body fluids.

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PubMed

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A tetraguanidinium ligand binds to the surface of the tetramerization domain of protein P53.

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De novo design of molecular architectures by evolutionary assembly of drug-derived building blocks

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12 December 2020

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Alterations in plasma prolyl endopeptidase activity in depression, mania, and schizophrenia: effects of antidepressants, mood stabilizers, and antipsychotic drugs

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Computational tools for structure-based ligand design

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12 December 2020

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Proline residues in the maturation and degradation of peptide hormones and neuropeptides

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Prolyl oligopeptidase: an unusual beta-propeller domain regulates proteolysis

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Chance favors the prepared mind--from serendipity to rational drug design

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Post-proline cleaving enzyme and post-proline dipeptidyl aminopeptidase. Comparison of two peptidases with high specificity for proline residues

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12 December 2020

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Computational ligand design.

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https://pubmed.ncbi.nlm.nih.gov/16267689

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12 December 2020

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Advances in the use of synthetic combinatorial chemistry: mixture-based libraries

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PubMed

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12 December 2020

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Lead discovery using molecular docking

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PubMed

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12 December 2020

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A genetic algorithm for the automated generation of small organic molecules: drug design using an evolutionary algorithm.

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1H(N), 15N, 13CO, 13Calpha, 13Cbeta assignment and secondary structure of a 20 kDa alpha-L-fucosidase from pea using TROSY

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Synthesis and NMR structure of p41icf, a potent inhibitor of human cathepsin L

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Protein-protein docking: is the glass half-full or half-empty?

1 reference

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PubMed

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Genetic algorithm for the design of molecules with desired properties

1 reference

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PubMed

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inferred from PubMed ID database lookup

Prediction of the Secondary Structure of Proteins from their Amino Acid Sequence

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/16267689

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inferred from PubMed ID database lookup

DNA topoisomerases

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/16267689

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The maturation pathway of microcin B17, a peptide inhibitor of DNA gyrase.

1 reference

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/16267689

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based on heuristic

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Peptides as drugs: is there a market?

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https://pubmed.ncbi.nlm.nih.gov/16267689

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based on heuristic

inferred from PubMed ID database lookup

Allele-specific motifs revealed by sequencing of self-peptides eluted from MHC molecules

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16267689

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based on heuristic

inferred from PubMed ID database lookup

A genetic algorithm for structure-based de novo design

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16267689

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Surfing the p53 network

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16267689

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12 December 2020

based on heuristic

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Peptide design by artificial neural networks and computer-based evolutionary search

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16267689

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The peptide antibiotic microcin B17 induces double-strand cleavage of DNA mediated by E. coli DNA gyrase

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16267689

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based on heuristic

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Prediction of binding constants of protein ligands: a fast method for the prioritization of hits obtained from de novo design or 3D database search programs

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/16267689

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Identifiers

DOI

10.1007/S10822-005-9015-1

1 reference

stated in

Europe PubMed Central

PubMed publication ID

16267689

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16267689%20AND%20SRC:MED&resulttype=core&format=json

retrieved

8 January 2020

DBLP publication ID

journals/jcamd/BeldaMLMTPNG05

1 reference

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DBLP Dataset 2021-01-02

retrieved

28 January 2021

PubMed publication ID

16267689

1 reference

stated in

Europe PubMed Central

PubMed publication ID

16267689

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16267689%20AND%20SRC:MED&resulttype=core&format=json

retrieved

8 January 2020

 

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