Analysis of the Genes Involved in Thiocyanate Oxidation during Growth in Continuous Culture of the Haloalkaliphilic Sulfur-Oxidizing Bacterium Thioalkalivibrio thiocyanoxidans ARh 2T Using Transcriptomics (Q47139974)

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scientific article published in November 2017

Language	Label	Description	Also known as
English	Analysis of the Genes Involved in Thiocyanate Oxidation during Growth in Continuous Culture of the Haloalkaliphilic Sulfur-Oxidizing Bacterium Thioalkalivibrio thiocyanoxidans ARh 2T Using Transcriptomics	scientific article published in November 2017

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

9 January 2018

http://europepmc.org/abstract/PMC/5744179

Analysis of the Genes Involved in Thiocyanate Oxidation during Growth in Continuous Culture of the Haloalkaliphilic Sulfur-Oxidizing Bacterium Thioalkalivibrio thiocyanoxidans ARh 2T Using Transcriptomics (English)

1 reference

Europe PubMed Central

PMC publication ID

9 January 2018

http://europepmc.org/abstract/PMC/5744179

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1

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Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29285524%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

4

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PMC publication ID

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1 June 2020

Dimitry Y Sorokin

3

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Dimitry Y Sorokin

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29285524%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

author name string

Cherel Balkema

2

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publication date

1 November 2017

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Europe PubMed Central

PMC publication ID

9 January 2018

http://europepmc.org/abstract/PMC/5744179

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Europe PubMed Central

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1 June 2020

2

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1 June 2020

describes a project that uses

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DESeq2

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

Draft Genome Sequence of Thiohalobacter thiocyanaticus Strain FOKN1, a Neutrophilic Halophile Capable of Thiocyanate Degradation

1 reference

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23 May 2018

Comparative Genome Analysis of Three Thiocyanate Oxidizing Thioalkalivibrio Species Isolated from Soda Lakes.

1 reference

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23 May 2018

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

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23 May 2018

New insights into the genetic and metabolic diversity of thiocyanate-degrading microbial consortia

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23 May 2018

BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences

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23 May 2018

Partial genome sequence of the haloalkaliphilic soda lake bacterium Thioalkalivibrio thiocyanoxidans ARh 2(T).

1 reference

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23 May 2018

Functional microbiology of soda lakes.

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23 May 2018

Orchestrating high-throughput genomic analysis with Bioconductor

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23 May 2018

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

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23 May 2018

Microbial diversity and biogeochemical cycling in soda lakes

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23 May 2018

Diversity of the metal-transporting P1B-type ATPases

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23 May 2018

Carbonyl sulfide hydrolase from Thiobacillus thioparus strain THI115 is one of the β-carbonic anhydrase family enzymes

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23 May 2018

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23 May 2018

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

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23 May 2018

Comparative analyses imply that the enigmatic Sigma factor 54 is a central controller of the bacterial exterior

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23 May 2018

The microbial sulfur cycle at extremely haloalkaline conditions of soda lakes

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23 May 2018

Differential expression analysis for sequence count data

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23 May 2018

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23 May 2018

Biochemistry and molecular biology of lithotrophic sulfur oxidation by taxonomically and ecologically diverse bacteria and archaea.

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23 May 2018

Circos: an information aesthetic for comparative genomics

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23 May 2018

Protein-based organelles in bacteria: carboxysomes and related microcompartments

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23 May 2018

An improved general amino acid replacement matrix

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23 May 2018

Diversity, activity, and abundance of sulfate-reducing bacteria in saline and hypersaline soda lakes

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23 May 2018

Involvement of the cynABDS operon and the CO2-concentrating mechanism in the light-dependent transport and metabolism of cyanate by cyanobacteria

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23 May 2018

Exopolysaccharide-associated protein sorting in environmental organisms: the PEP-CTERM/EpsH system. Application of a novel phylogenetic profiling heuristic

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23 May 2018

The structure of beta-carbonic anhydrase from the carboxysomal shell reveals a distinct subclass with one active site for the price of two

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23 May 2018

Haloalkaliphilic sulfur-oxidizing bacteria in soda lakes

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5744179

23 May 2018

Prediction of twin-arginine signal peptides

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23 May 2018

ProtTest: selection of best-fit models of protein evolution

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23 May 2018

Thioalkalivibrio thiocyanoxidans sp. nov. and Thioalkalivibrio paradoxus sp. nov., novel alkaliphilic, obligately autotrophic, sulfur-oxidizing bacteria capable of growth on thiocyanate, from soda lakes

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23 May 2018

Thioalkalimicrobium aerophilum gen. nov., sp. nov. and Thioalkalimicrobium sibericum sp. nov., and Thioalkalivibrio versutus gen. nov., sp. nov., Thioalkalivibrio nitratis sp.nov., novel and Thioalkalivibrio denitrificancs sp. nov., novel obligately

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23 May 2018

Microbial thiocyanate utilization under highly alkaline conditions

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Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

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23 May 2018

Cloning of genes coding for the three subunits of thiocyanate hydrolase of Thiobacillus thioparus THI 115 and their evolutionary relationships to nitrile hydratase

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23 May 2018

Regulation by cyanate of the genes involved in carbon and nitrogen assimilation in the cyanobacterium Synechococcus sp. strain PCC 7942.

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23 May 2018

The structure of flavocytochrome c sulfide dehydrogenase from a purple phototrophic bacterium

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23 May 2018

A thiocyanate hydrolase of Thiobacillus thioparus. A novel enzyme catalyzing the formation of carbonyl sulfide from thiocyanate

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23 May 2018

Sulfite oxidation in the purple sulfur bacterium Allochromatium vinosum: identification of SoeABC as a major player and relevance of SoxYZ in the process

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15 August 2018

Carbonic anhydrase inhibitors. Inhibition of the beta-class enzyme from the pathogenic yeast Candida glabrata with anions.

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A novel membrane-bound flavocytochrome c sulfide dehydrogenase from the colourless sulfur bacterium Thiobacillus sp. W5

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12 December 2020

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A colorimetric method for the determination of thiosulfate

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Identifiers

10.1128/MSYSTEMS.00102-17

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29285524%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29285524%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29285524%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

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