Identification of RNA-binding domains of RNA-binding proteins in cultured cells on a system-wide scale with RBDmap. (Q47449956)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29095441%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

title

Identification of RNA-binding domains of RNA-binding proteins in cultured cells on a system-wide scale with RBDmap (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29095441%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29095441%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

Christian K Frese

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29095441%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

Bernd Fischer

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29095441%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

Rastislav Horos

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29095441%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

Sophia Foehr

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29095441%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

Tomaž Curk

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29095441%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

Matthias Hentze

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29095441%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

9

Jeroen Krijgsveld

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29095441%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

6

Anne-Marie Alleaume

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29095441%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

author name string

Aino I Järvelin

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29095441%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

publication date

2 November 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29095441%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29095441%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

volume

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29095441%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

issue

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29095441%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

page(s)

2447-2464

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29095441%20AND%20SRC:MED&resulttype=core&format=json

RNA-binding proteins: modular design for efficient function

8 April 2020

cites work

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

A compendium of RNA-binding motifs for decoding gene regulation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

Noncanonical function of glutamyl-prolyl-tRNA synthetase: gene-specific silencing of translation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

Systemic iron homeostasis and the iron-responsive element/iron-regulatory protein (IRE/IRP) regulatory network

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

Posttranscriptional control of T cell effector function by aerobic glycolysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

The new (dis)order in RNA regulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

Insights into RNA biology from an atlas of mammalian mRNA-binding proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

System-wide identification of RNA-binding proteins by interactome capture.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

The RNA-binding protein repertoire of embryonic stem cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

Global analysis of yeast mRNPs

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

Conserved mRNA-binding proteomes in eukaryotic organisms.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

Global changes of the RNA-bound proteome during the maternal-to-zygotic transition in Drosophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

The mRNA-bound proteome of the early fly embryo

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

The RNA-binding protein repertoire of Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

UV crosslinked mRNA-binding proteins captured from leaf mesophyll protoplasts

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

The mRNA-bound proteome of the human malaria parasite Plasmodium falciparum

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

Serial interactome capture of the human cell nucleus

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

Evolutionary conservation and expression of human RNA-binding proteins and their role in human genetic disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

Trim25 Is an RNA-Specific Activator of Lin28a/TuT4-Mediated Uridylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

FASTKD2 is an RNA-binding protein required for mitochondrial RNA processing and translation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

Identification of novel non-canonical RNA-binding sites in Gemin5 involved in internal initiation of translation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

Comprehensive Identification of RNA-Binding Domains in Human Cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

The Cardiomyocyte RNA-Binding Proteome: Links to Intermediary Metabolism and Heart Disease.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

Crosslinking proteins to nucleic acids by ultraviolet laser irradiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

Photo-cross-linking and high-resolution mass spectrometry for assignment of RNA-binding sites in RNA-binding proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

A versatile assay for RNA-binding proteins in living cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

High-Resolution Mapping of RNA-Binding Regions in the Nuclear Proteome of Embryonic Stem Cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

Systematic discovery of Xist RNA binding proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

The Xist lncRNA interacts directly with SHARP to silence transcription through HDAC3.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

Specific RNP capture with antisense LNA/DNA mixmers.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

Identification of RNA-binding Proteins in Macrophages by Interactome Capture

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

One-hour proteome analysis in yeast.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

Tandem Mass Tags: A Novel Quantification Strategy for Comparative Analysis of Complex Protein Mixtures by MS/MS

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

Andromeda: a peptide search engine integrated into the MaxQuant environment

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

Linear models and empirical bayes methods for assessing differential expression in microarray experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

High-resolution gene expression profiling for simultaneous kinetic parameter analysis of RNA synthesis and decay

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

Universal sample preparation method for proteome analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

In-gel isoelectric focusing of peptides as a tool for improved protein identification.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

The SCX/IMAC enrichment approach for global phosphorylation analysis by mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

Off-line high-pH reversed-phase fractionation for in-depth phosphoproteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

Current algorithmic solutions for peptide-based proteomics data generation and identification

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

Protein structure prediction on the Web: a case study using the Phyre server

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

Investigation of protein–RNA interactions by mass spectrometry—Techniques and applications

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

A census of human RNA-binding proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

Functional splicing network reveals extensive regulatory potential of the core spliceosomal machinery

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

Genome-wide identification of Fas/CD95 alternative splicing regulators reveals links with iron homeostasis

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

Metabolic labeling of newly transcribed RNA for high resolution gene expression profiling of RNA synthesis, processing and decay in cell culture

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2017.106

Metabolic enzymes that bind RNA: yet another level of cellular regulatory network?

31 March 2020

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29095441

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NPROT.2017.106

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29095441%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

1 reference