The effects of evolutionary distance on TWINSCAN, an algorithm for pair-wise comparative gene prediction (Q48175538)

9 February 2018

title

The effects of evolutionary distance on TWINSCAN, an algorithm for pair-wise comparative gene prediction (English)

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9 February 2018

author name string

Wang M

series ordinal

1

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9 February 2018

Buhler J

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2

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9 February 2018

Brent MR

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3

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9 February 2018

publication date

1 January 2003

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9 February 2018

Cold Spring Harbor Symposia on Quantitative Biology

published in

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9 February 2018

volume

68

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9 February 2018

page(s)

125-130

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9 February 2018

SLAM: cross-species gene finding and alignment with a generalized pair hidden Markov model

cites work

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https://api.crossref.org/works/10.1101%2FSQB.2003.68.125

Whole-Genome Shotgun Assembly and Analysis of the Genome of Fugu rubripes

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https://api.crossref.org/works/10.1101%2FSQB.2003.68.125

Phylogenetic shadowing of primate sequences to find functional regions of the human genome

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2003.68.125

Prediction of complete gene structures in human genomic DNA

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2003.68.125

Leveraging the mouse genome for gene prediction in human: from whole-genome shotgun reads to a global synteny map.

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2003.68.125

Comparison of mouse and human genomes followed by experimental verification yields an estimated 1,019 additional genes

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2003.68.125

Eval: a software package for analysis of genome annotations

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2003.68.125

The dog genome: survey sequencing and comparative analysis

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2003.68.125

Comparative gene prediction in human and mouse

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2003.68.125

RefSeq and LocusLink: NCBI gene-centered resources

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2003.68.125

Estimate of human gene number provided by genome-wide analysis using Tetraodon nigroviridis DNA sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2003.68.125

Human-mouse alignments with BLASTZ

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2003.68.125

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2003.68.125

Comparative analyses of multi-species sequences from targeted genomic regions

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2003.68.125

Initial sequencing and comparative analysis of the mouse genome

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2003.68.125

Analysis of compositionally biased regions in sequence databases

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2003.68.125

Identification of rat genes by TWINSCAN gene prediction, RT-PCR, and direct sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2003.68.125

Human–Mouse Gene Identification by Comparative Evidence Integration and Evolutionary Analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2003.68.125

21 January 2018

Identifiers

DOI

10.1101/SQB.2003.68.125

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9 February 2018

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9 February 2018