Side-chain ionization states in a potassium channel (Q40179676)

18 September 2017

Side-chain ionization states in a potassium channel (English)

1 reference

18 September 2017

Ranatunga KM

1

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18 September 2017

Shrivastava IH

series ordinal

2

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18 September 2017

Smith GR

series ordinal

3

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18 September 2017

Sansom MS

series ordinal

4

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18 September 2017

language of work or name

English

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publication date

1 March 2001

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18 September 2017

10

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based on heuristic

inferred from page(s)

published in

Biophysical Journal

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18 September 2017

80

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18 September 2017

3

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18 September 2017

1210-1219

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Raster3D: photorealistic molecular graphics

18 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301316

Hinges, swivels and switches: the role of prolines in signalling via transmembrane alpha-helices

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301316

Simulations of ion channels--watching ions and water move

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301316

Homology modeling and molecular dynamics simulation studies of an inward rectifier potassium channel

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301316

Molecular dynamics of the KcsA K(+) channel in a bilayer membrane

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301316

Ion permeation mechanism of the potassium channel

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301316

Tests of continuum theories as models of ion channels. I. Poisson-Boltzmann theory versus Brownian dynamics.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301316

Simulations of ion permeation through a potassium channel: molecular dynamics of KcsA in a phospholipid bilayer

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301316

Structure and dynamics of K channel pore-lining helices: a comparative simulation study

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301316

Spectroscopic mapping of voltage sensor movement in the Shaker potassium channel

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301316

Atomic scale movement of the voltage-sensing region in a potassium channel measured via spectroscopy

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301316

Molecular dynamics study of the KcsA potassium channel

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301316

Single streptomyces lividans K(+) channels: functional asymmetries and sidedness of proton activation

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301316

The bacterial K+ channel structure and its implications for neuronal channels

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301316

Structural rearrangements underlying K+-channel activation gating

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301316

Structure of the MscL homolog from Mycobacterium tuberculosis: a gated mechanosensitive ion channel

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301316

Electrostatics and the ion selectivity of ligand-gated channels

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301316

Three-dimensional architecture and gating mechanism of a K+ channel studied by EPR spectroscopy

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301316

pH-dependent gating in the Streptomyces lividans K+ channel

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301316

The Structure of the Potassium Channel: Molecular Basis of K+ Conduction and Selectivity

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301316

Protein-water-ion interactions in a model of the pore domain of a potassium channel: a simulation study.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301316

Permeation through an open channel: Poisson-Nernst-Planck theory of a synthetic ionic channel

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301316

Conformation and hydrogen ion titration of proteins: a continuum electrostatic model with conformational flexibility

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301316

How electrolyte shielding influences the electrical potential in transmembrane ion channels

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301316

pKa's of ionizable groups in proteins: atomic detail from a continuum electrostatic model

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301316

Ion transport in a model gramicidin channel. Structure and thermodynamics

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301316

The cavity and pore helices in the KcsA K+ channel: electrostatic stabilization of monovalent cations.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301316

Cooperating to unlock the voltage-dependent K channel

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301316

Electrostatic calculations of the pKa values of ionizable groups in bacteriorhodopsin

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301316

The nicotinic acetylcholine receptor: from molecular model to single-channel conductance.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301316

Molecular dynamics study of water and Na+ ions in models of the pore region of the nicotinic acetylcholine receptor

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301316

Prediction of titration properties of structures of a protein derived from molecular dynamics trajectories

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301316

Electrostatic properties of two porin channels from Escherichia coli

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301316

Multiple-site titration curves of proteins: an analysis of exact and approximate methods for their calculation

4 November 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2976097-3

CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2976097-3

Blocker protection in the pore of a voltage-gated K+ channel and its structural implications

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2976097-3

Electrostatics and diffusion of molecules in solution: simulations with the University of Houston Brownian dynamics program

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2976097-3

Potassium and sodium binding to the outer mouth of the K+ channel

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2976097-3

MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2976097-3

Mutations affecting TEA blockade and ion permeation in voltage-activated K+ channels

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2976097-3

Exploring the open pore of the potassium channel from Streptomyces lividans

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2976097-3

Ion channels of biological membranes: prediction of single channel conductance

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2976097-3

Electrostatics studies and molecular dynamics simulations of a homology model of the Shaker K+ channel pore.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2976097-3

On the calculation of pKas in proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2976097-3

Molecular dynamics simulations of isolated transmembrane helices of potassium channels

7 January 2021

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/11222285

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/S0006-3495(01)76097-3

1 reference

18 September 2017

1 reference

18 September 2017

PubMed publication ID

11222285

1 reference