Water permeation through gramicidin A: desformylation and the double helix: a molecular dynamics study (Q40207672)

18 September 2017

Water permeation through gramicidin A: desformylation and the double helix: a molecular dynamics study (English)

1 reference

18 September 2017

3

Peter Pohl

1 reference

18 September 2017

Bert L de Groot

1

1 reference

18 September 2017

D Peter Tieleman

series ordinal

2

1 reference

18 September 2017

Helmut Grubmüller

series ordinal

4

1 reference

18 September 2017

language of work or name

English

0 references

publication date

1 June 2002

1 reference

18 September 2017

1 reference

18 September 2017

82

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18 September 2017

6

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18 September 2017

2934-2942

1 reference

Simulation approaches to ion channel structure-function relationships

18 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302081

Water permeation across biological membranes: mechanism and dynamics of aquaporin-1 and GlpF.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302081

Water conduction through the hydrophobic channel of a carbon nanotube

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302081

Highly selective water channel activity measured by voltage clamp: analysis of planar lipid bilayers reconstituted with purified AqpZ.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302081

Water and ion permeation of aquaporin-1 in planar lipid bilayers. Major differences in structural determinants and stoichiometry.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302081

Desformylgramicidin: a model channel with an extremely high water permeability.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302081

Structural determinants of water permeation through aquaporin-1

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302081

Solvent drag across gramicidin channels demonstrated by microelectrodes.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302081

Simulation study of a gramicidin/lipid bilayer system in excess water and lipid. II. Rates and mechanisms of water transport

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302081

Simulation study of a gramicidin/lipid bilayer system in excess water and lipid. I. Structure of the molecular complex

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302081

Fluid phase structure of EPC and DMPC bilayers

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302081

The conducting form of gramicidin A is a right-handed double-stranded double helix

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302081

Shifting the equilibrium mixture of gramicidin double helices toward a single conformation with multivalent cationic salts

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302081

Streaming potentials in gramicidin channels measured with ion-selective microelectrodes

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302081

High-resolution polypeptide structure in a lamellar phase lipid environment from solid state NMR derived orientational constraints

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302081

Molecular dynamics study of free energy profiles for organic cations in gramicidin A channels

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302081

HOLE: a program for the analysis of the pore dimensions of ion channel structural models

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302081

High-Resolution Conformation of Gramicidin A in a Lipid Bilayer by Solid-State NMR

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302081

Sodium in gramicidin: an example of a permion

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302081

Molecular Dynamics Simulations of the Gramicidin Channel

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302081

Gramicidin Channels and Pores

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302081

Reconstitution of functional water channels in liposomes containing purified red cell CHIP28 protein

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302081

Appearance of water channels in Xenopus oocytes expressing red cell CHIP28 protein

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302081

Number of water molecules coupled to the transport of sodium, potassium and hydrogen ions via gramicidin, nonactin or valinomycin

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302081

Water permeability of gramicidin A-treated lipid bilayer membranes

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302081

Interaction of ions and water in gramicidin A channels: streaming potentials across lipid bilayer membranes

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302081

Engineering the gramicidin channel

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302081

Water and glycerol permeabilities of aquaporins 1-5 and MIP determined quantitatively by expression of epitope-tagged constructs in Xenopus oocytes

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302081

Molecular dynamics simulations of a fluid bilayer of dipalmitoylphosphatidylcholine at full hydration, constant pressure, and constant temperature

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302081

Structure and dynamics of a proton wire: a theoretical study of H+ translocation along the single-file water chain in the gramicidin A channel

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302081

Ultrastructure, pharmacologic inhibition, and transport selectivity of aquaporin channel-forming integral protein in proteoliposomes.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302081

Mechanism of uncoupling of oxidative phosphorylation by gramicidin

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302081

Functional reconstitution of the isolated erythrocyte water channel CHIP28.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302081

The aquaporins, blueprints for cellular plumbing systems.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302081

Ion binding constants for gramicidin A obtained from water permeability measurements.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302081

Ion transfer across lipid membranes in the presence of gramicidin A. I. Studies of the unit conductance channel

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302081

20 August 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975634-8

1H-NMR study of gramicidin A transmembrane ion channel. Head-to-head right-handed, single-stranded helices

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975634-8

Free energy calculations by computer simulation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975634-8

Molecular dynamics with coupling to an external bath

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975634-8

GROMACS: A message-passing parallel molecular dynamics implementation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975634-8

CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975634-8

Gramicidin channel controversy - reply

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975634-8

Gramicidin channel controversy--revisited

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975634-8

Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975634-8

Climatic impact of tropical lowland deforestation on nearby montane cloud forests

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975634-8

Setting up and optimization of membrane protein simulations.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975634-8

Phospholipid chain length alters the equilibrium between pore and channel forms of gramicidin

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975634-8

Gramicidin channel controversy--the structure in a lipid environment

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975634-8

GROMACS 3.0: a package for molecular simulation and trajectory analysis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975634-8

Settle: An analytical version of the SHAKE and RATTLE algorithm for rigid water models

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975634-8

The conformational preference of gramicidin channels is a function of lipid bilayer thickness

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975634-8

Environment- and sequence-dependent modulation of the double-stranded to single-stranded conformational transition of gramicidin A in membranes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975634-8

GRAMICIDIN A. V. THE STRUCTURE OF VALINE- AND ISOLEUCINE-GRAMICIDIN A

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975634-8

Recent Advances in the High Resolution Structures of Bacterial Channels: Gramicidin A

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975634-8

Structure, energetics, and dynamics of lipid-protein interactions: A molecular dynamics study of the gramicidin A channel in a DMPC bilayer

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975634-8

High‐Temperature Equation of State by a Perturbation Method. I. Nonpolar Gases

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975634-8

10.1016/S0006-3495(02)75634-8

7 January 2021

Identifiers

DOI

1 reference

18 September 2017

1 reference

18 September 2017

PubMed publication ID

12023216

1 reference