Atomistic folding simulations of the five-helix bundle protein λ(6−85). (Q42012438)

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18 January 2020

title

Atomistic folding simulations of the five-helix bundle protein λ(6−85) (English)

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18 January 2020

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1

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18 January 2020

Vincent A. Voelz

series ordinal

2

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18 January 2020

3

Vijay S Pande

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18 January 2020

language of work or name

English

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publication date

1 February 2011

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Journal of the American Chemical Society

18 January 2020

published in

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18 January 2020

volume

133

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18 January 2020

issue

4

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18 January 2020

page(s)

664-667

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Enhanced modeling via network theory: Adaptive sampling of Markov state models

18 January 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3043158

Protein folded states are kinetic hubs

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3043158

Network models for molecular kinetics and their initial applications to human health

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3043158

A Survey of λ Repressor Fragments from Two-State to Downhill Folding

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3043158

Molecular simulation of ab initio protein folding for a millisecond folder NTL9(1-39)

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3043158

Constructing the equilibrium ensemble of folding pathways from short off-equilibrium simulations.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3043158

Progress and challenges in the automated construction of Markov state models for full protein systems

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3043158

Direct observation of downhill folding of lambda-repressor in a microfluidic mixer

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3043158

Analysis of the free-energy surface of proteins from reversible folding simulations

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3043158

Using generalized ensemble simulations and Markov state models to identify conformational states

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3043158

Transition networks for modeling the kinetics of conformational change in macromolecules

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3043158

Mapping protein collapse with single-molecule fluorescence and kinetic synchrotron radiation circular dichroism spectroscopy

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3043158

Kinetics are probe-dependent during downhill folding of an engineered lambda6-85 protein

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3043158

Folding lambda-repressor at its speed limit

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3043158

The protein folding 'speed limit'.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3043158

Submillisecond folding of monomeric lambda repressor

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3043158

The operator-binding domain of lambda repressor: structure and DNA recognition

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3043158

The DNA binding arm of lambda repressor: critical contacts from a flexible region

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3043158

Calculation of the distribution of eigenvalues and eigenvectors in Markovian state models for molecular dynamics

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3043158

Kinetic equivalence of the heat and cold structural transitions of lambda6-85.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3043158

On the extended beta-conformation propensity of polypeptides at high temperature

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3043158

Elucidating the folding problem of helical peptides using empirical parameters

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3043158

17 August 2018

Protein-folding dynamics

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21174461

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Protein folding dynamics: quantitative comparison between theory and experiment

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21174461

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Folding at the speed limit

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21174461

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1021/JA205736M

1 reference

15 October 2017

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18 January 2020

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18 January 2020

PubMed publication ID

21174461

1 reference