A unified model of the standard genetic code (Q42292578)

20 October 2017

A unified model of the standard genetic code (English)

1 reference

20 October 2017

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28405378%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Gabriel S Zamudio

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28405378%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

author name string

Eberto R Morgado

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28405378%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

publication date

1 March 2017

1 reference

Royal Society Open Science

20 October 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28405378%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

volume

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28405378%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

issue

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28405378%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

page(s)

160908

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28405378%20AND%20SRC:MED&resulttype=core&format=json

tRNA acceptor-stem and anticodon bases embed separate features of amino acid chemistry

5 June 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5383835

Functional Class I and II Amino Acid-activating Enzymes Can Be Coded by Opposite Strands of the Same Gene

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5383835

tRNA acceptor stem and anticodon bases form independent codes related to protein folding

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5383835

Temperature dependence of amino acid hydrophobicities.

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5383835

Three-Dimensional Algebraic Models of the tRNA Code and 12 Graphs for Representing the Amino Acids

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5383835

The Rodin-Ohno hypothesis that two enzyme superfamilies descended from one ancestral gene: an unlikely scenario for the origins of translation that will not be dismissed.

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5383835

Statistical evaluation of the Rodin-Ohno hypothesis: sense/antisense coding of ancestral class I and II aminoacyl-tRNA synthetases

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5383835

On origin of genetic code and tRNA before translation

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5383835

On primordial sense-antisense coding

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5383835

On the evolution of the standard genetic code: vestiges of critical scale invariance from the RNA world in current prokaryote genomes

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5383835

Whence the genetic code? Thawing the 'frozen accident'.

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5383835

Evolution of the genetic code: partial optimization of a random code for robustness to translation error in a rugged fitness landscape

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5383835

A novel Lie algebra of the genetic code over the Galois field of four DNA bases.

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5383835

A genetic code Boolean structure. I. The meaning of Boolean deductions

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5383835

The dependence of cell-free protein synthesis in E. coli upon naturally occurring or synthetic polyribonucleotides

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5383835

Aminoacyl-tRNA synthetases: potential markers of genetic code development

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5383835

Early fixation of an optimal genetic code

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5383835

Aminoacyl-tRNA synthetases, the genetic code, and the evolutionary process

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5383835

Evolution of aminoacyl-tRNA synthetases--analysis of unique domain architectures and phylogenetic trees reveals a complex history of horizontal gene transfer events.

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5383835

The genetic code is one in a million

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5383835

Four primordial modes of tRNA-synthetase recognition, determined by the (G,C) operational code

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5383835

The presence of codon-anticodon pairs in the acceptor stem of tRNAs

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5383835

Phylogeny from function: evidence from the molecular fossil record that tRNA originated in replication, not translation

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5383835

An operational RNA code for amino acids and variations in critical nucleotide sequences in evolution

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5383835

An operational RNA code for amino acids and possible relationship to genetic code

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5383835

The transfer RNA identity problem: a search for rules

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5383835

Two types of aminoacyl-tRNA synthetases could be originally encoded by complementary strands of the same nucleic acid

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5383835

Estimation of evolutionary distances between homologous nucleotide sequences

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5383835

The genetic code and error transmission

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5383835

The molecular basis for the genetic code

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5383835

On the evolution of the genetic code

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5383835

The origin of the genetic code

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5383835

The extension reached by the minimization of the polarity distances during the evolution of the genetic code

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5383835

Partition of tRNA synthetases into two classes based on mutually exclusive sets of sequence motifs

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5383835

Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5383835

A speculation on the origin of protein synthesis

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5383835

The hypercycle. A principle of natural self-organization. Part A: Emergence of the hypercycle

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5383835

How old is the genetic code? Statistical geometry of tRNA provides an answer.

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5383835

The genetic code--yesterday, today, and tomorrow

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5383835

Genetic hotels for the standard genetic code: evolutionary analysis based upon novel three-dimensional algebraic models.

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5383835

A self-referential model for the formation of the genetic code

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5383835

On the physical basis of the amino acid polar requirement.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5383835

On the origin of the genetic code: signatures of its primordial complementarity in tRNAs and aminoacyl-tRNA synthetases

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5383835

An asymmetric underlying rule in the assignment of codons: possible clue to a quick early evolution of the genetic code via successive binary choices

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5383835

Partitioning of aminoacyl-tRNA synthetases in two classes could have been encoded in a strand-symmetric RNA world

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5383835

An extended RNA code and its relationship to the standard genetic code: an algebraic and geometrical approach.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5383835

Phylogenetic analysis of the aminoacyl-tRNA synthetases.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5383835

17 August 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSOS.160908

21 January 2018

The second genetic code

1 reference

https://api.crossref.org/works/10.1098%2FRSOS.160908

pkaPS: prediction of protein kinase A phosphorylation sites with the simplified kinase-substrate binding model

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSOS.160908

Presence and abundance of CENP-B box sequences in great ape subsets of primate-specific alpha-satellite DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSOS.160908

Error Minimization and Coding Triplet/Binding Site Associations Are Independent Features of the Canonical Genetic Code

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSOS.160908

Algebraic model for the evolution of the genetic code

21 January 2018

1 reference

12 December 2020

Structure of the genetic code suggested by the hydropathy correlation between anticodons and amino acid residues

1 reference

12 December 2020

The genetic code revisited

1 reference

12 December 2020

A quantitative measure of error minimization in the genetic code

1 reference

12 December 2020

Metabolic basis for the self-referential genetic code

1 reference

12 December 2020

Symmetrical and Thermodynamic Properties of Phenotypic Graphs of Amino Acids Encoded by the Primeval RNY Code

1 reference

12 December 2020

On the Origin of Species by Means of Natural Selection, or the Preservation of Favoured Races in the Struggle for Life

1 reference

12 December 2020

Evolution of the genetic code

1 reference

12 December 2020

Transfer-RNA: the early adaptor

1 reference

12 December 2020

Transfer-RNA, an early gene?

1 reference

12 December 2020

Searching tRNA sequences for relatedness to aminoacyl-tRNA synthetase families

1 reference

12 December 2020

The hypercube structure of the genetic code explains conservative and non-conservative aminoacid substitutions in vivo and in vitro

1 reference

12 December 2020

A complementary circular code in the protein coding genes

1 reference

12 December 2020

Identifiers

DOI

10.1098/RSOS.160908

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28405378%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28405378%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

PubMed publication ID

28405378

1 reference