Nucleosome stability measured in situ by automated quantitative imaging. (Q42371838)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28986581%20AND%20SRC:MED&resulttype=core&format=json

1 April 2020

title

Nucleosome stability measured in situ by automated quantitative imaging (English)

1 reference

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1 April 2020

12

1 reference

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1 April 2020

Attila Horvath

3

1 reference

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1 April 2020

Laszlo Nagy

14

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1 April 2020

author name string

László Imre

1

1 reference

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1 April 2020

Zoltán Simándi

2

1 reference

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1 April 2020

György Fenyőfalvi

4

1 reference

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1 April 2020

Péter Nánási

5

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1 April 2020

Erfaneh Firouzi Niaki

6

1 reference

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1 April 2020

Éva Hegedüs

7

1 reference

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1 April 2020

Zsolt Bacsó

8

1 reference

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1 April 2020

Urbain Weyemi

9

1 reference

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1 April 2020

Rebekka Mauser

10

1 reference

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1 April 2020

Juan Ausio

11

1 reference

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1 April 2020

William Bonner

13

1 reference

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1 April 2020

Hiroshi Kimura

15

1 reference

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1 April 2020

Gábor Szabó

16

1 reference

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1 April 2020

language of work or name

English

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publication date

6 October 2017

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1 April 2020

1 reference

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1 April 2020

volume

7

1 reference

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1 April 2020

issue

1

1 reference

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1 April 2020

page(s)

12734

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Creative Commons Attribution 4.0 International

1 April 2020

copyright license

start time

6 October 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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describes a project that uses

ImageJ

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC5630628/fullTextXML

inferred from PubMed Central ID database lookup

CellProfiler

object named as

CellProfiler

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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29 May 2018

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Genomic Nucleosome Organization Reconstituted with Pure Proteins

29 May 2018

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Current Proteomic Methods to Investigate the Dynamics of Histone Turnover in the Central Nervous System.

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Proteomics to study DNA-bound and chromatin-associated gene regulatory complexes

29 May 2018

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Mechanisms of small molecule-DNA interactions probed by single-molecule force spectroscopy.

29 May 2018

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Nucleosome dynamics during chromatin remodeling in vivo

29 May 2018

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Stepwise nucleosome translocation by RSC remodeling complexes

29 May 2018

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Lateral Thinking: How Histone Modifications Regulate Gene Expression

29 May 2018

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ChIP bias as a function of cross-linking time

29 May 2018

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Persistent γH2AX: A promising molecular marker of DNA damage and aging

29 May 2018

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Chromatin-remodeling and the initiation of transcription

29 May 2018

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The Structural Determinants behind the Epigenetic Role of Histone Variants

29 May 2018

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Histone modifications predispose genome regions to breakage and translocation

29 May 2018

1 reference

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A novel hybrid single molecule approach reveals spontaneous DNA motion in the nucleosome

29 May 2018

1 reference

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DNA structure and function

29 May 2018

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Constitutive heterochromatin formation and transcription in mammals

29 May 2018

1 reference

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Histone exchange, chromatin structure and the regulation of transcription

29 May 2018

1 reference

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Nanoscale histone localization in live cells reveals reduced chromatin mobility in response to DNA damage

29 May 2018

1 reference

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γH2AX foci on apparently intact mitotic chromosomes: not signatures of misrejoining events but signals of unresolved DNA damage

29 May 2018

1 reference

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Post-translational modifications of histones that influence nucleosome dynamics

29 May 2018

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Role of DNA sequence in chromatin remodeling and the formation of nucleosome-free regions

29 May 2018

1 reference

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PRMT1 and PRMT8 regulate retinoic acid-dependent neuronal differentiation with implications to neuropathology

29 May 2018

1 reference

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Mapping the genomic binding sites of the activated retinoid X receptor in murine bone marrow-derived macrophages using chromatin immunoprecipitation sequencing

29 May 2018

1 reference

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Characterization of nucleosome unwrapping within chromatin fibers using magnetic tweezers

29 May 2018

1 reference

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Site-specific human histone H3 methylation stability: fast K4me3 turnover

29 May 2018

1 reference

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Towards a mechanism for histone chaperones

29 May 2018

1 reference

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Transcription-generated torsional stress destabilizes nucleosomes.

29 May 2018

1 reference

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Torque modulates nucleosome stability and facilitates H2A/H2B dimer loss

29 May 2018

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Daunomycin, an antitumor DNA intercalator, influences histone-DNA interactions

29 May 2018

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Drug-induced histone eviction from open chromatin contributes to the chemotherapeutic effects of doxorubicin

29 May 2018

1 reference

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Doxorubicin enhances nucleosome turnover around promoters

29 May 2018

1 reference

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Chromatin remodeling at DNA double-strand breaks

29 May 2018

1 reference

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H3K4me3 interactions with TAF3 regulate preinitiation complex assembly and selective gene activation

29 May 2018

1 reference

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Systematic identification of functional residues in mammalian histone H2AX

29 May 2018

1 reference

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Histone H2A variants in nucleosomes and chromatin: more or less stable?

29 May 2018

1 reference

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Measuring genome-wide nucleosome turnover using CATCH-IT.

29 May 2018

1 reference

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Versatile toolbox for high throughput biochemical and functional studies with fluorescent fusion proteins

29 May 2018

1 reference

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Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

29 May 2018

1 reference

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Chromatin composition is changed by poly(ADP-ribosyl)ation during chromatin immunoprecipitation

29 May 2018

1 reference

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Histone density is maintained during transcription mediated by the chromatin remodeler RSC and histone chaperone NAP1 in vitro

29 May 2018

1 reference

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Differential oestrogen receptor binding is associated with clinical outcome in breast cancer

29 May 2018

1 reference

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The elongation rate of RNA polymerase determines the fate of transcribed nucleosomes.

29 May 2018

1 reference

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Tracking epigenetic histone modifications in single cells using Fab-based live endogenous modification labeling

29 May 2018

1 reference

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DNA stress and strain, in silico, in vitro and in vivo

29 May 2018

1 reference

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Topoisomerases, chromatin and transcription termination.

29 May 2018

1 reference

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Nucleosome structure(s) and stability: variations on a theme

29 May 2018

1 reference

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Effects of histone acetylation by Piccolo NuA4 on the structure of a nucleosome and the interactions between two nucleosomes

29 May 2018

1 reference

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Nucleosome accessibility governed by the dimer/tetramer interface

29 May 2018

1 reference

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Evolutionarily conserved, growth plate zone-specific regulation of the matrilin-1 promoter: L-Sox5/Sox6 and Nfi factors bound near TATA finely tune activation by Sox9.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5630628

A phospho/methyl switch at histone H3 regulates TFIID association with mitotic chromosomes.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5630628

Mechanical and structural properties of YOYO-1 complexed DNA

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5630628

Histone chaperones, histone acetylation, and the fluidity of the chromogenome

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5630628

Phosphorylation of histone H2A.X by DNA-dependent protein kinase is not affected by core histone acetylation, but it alters nucleosome stability and histone H1 binding

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5630628

Histone modifications are specifically relocated during gene activation and nuclear differentiation

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5630628

H2AX: functional roles and potential applications

29 May 2018

1 reference

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Flow cytometric and laser scanning microscopic approaches in epigenetics research

29 May 2018

1 reference

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Fast and accurate short read alignment with Burrows-Wheeler transform

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5630628

Genome-wide profiling of salt fractions maps physical properties of chromatin

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5630628

FACT-mediated exchange of histone variant H2AX regulated by phosphorylation of H2AX and ADP-ribosylation of Spt16.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5630628

The organization of histone H3 modifications as revealed by a panel of specific monoclonal antibodies

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5630628

Ribonucleoprotein-masked nicks at 50-kbp intervals in the eukaryotic genomic DNA.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5630628

DNA damage-dependent acetylation and ubiquitination of H2AX enhances chromatin dynamics

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5630628

Induction of ATM activation, histone H2AX phosphorylation and apoptosis by etoposide: relation to cell cycle phase

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5630628

The anthracycline antibiotics: antitumor drugs that alter chromatin structure

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5630628

Raft and cytoskeleton associations of an ABC transporter: P-glycoprotein

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5630628

Kinetics of core histones in living human cells: little exchange of H3 and H4 and some rapid exchange of H2B.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5630628

DNA intercalators induce specific release of HMG 14, HMG 17 and other DNA-binding proteins from chicken erythrocyte chromatin

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5630628

Binding of ethidium bromide causes dissociation of the nucleosome core particle

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5630628

Supercoiling of the DNA template during transcription

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5630628

Irresistible force meets immovable object: transcription and the nucleosome

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5630628

Fractionation of nucleosomes by salt elution from micrococcal nuclease-digested nuclei

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5630628

Nucleosome assembly dynamics involve spontaneous fluctuations in the handedness of tetrasomes.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5630628

Application of histone modification-specific interaction domains as an alternative to antibodies

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5630628

A method for evaluating nucleosome stability with a protein-binding fluorescent dye.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5630628

Structural variability of nucleosomes detected by single-pair Förster resonance energy transfer: histone acetylation, sequence variation, and salt effects

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5630628

The effect of salts on the stability of the H2A-H2B histone dimer

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5630628

DNA melting in the presence of fluorescent intercalating oxazole yellow dyes measured with a gel-based assay

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5630628

Regional specialization in human nuclei: visualization of discrete sites of transcription by RNA polymerase III.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5630628

Generation of a defined and uniform population of CNS progenitors and neurons from mouse embryonic stem cells

17 August 2018

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-12608-9

Nucleosome chiral transition under positive torsional stress in single chromatin fibers

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-12608-9

7 January 2021

Nucleosome core particle stability and conformational change. Effect of temperature, particle and NaCl concentrations, and crosslinking of histone H3 sulfhydryl groups

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-12608-9

7 January 2021

H2A.Z stabilizes chromatin in a way that is dependent on core histone acetylation

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-12608-9

7 January 2021

Daunomycin-induced unfolding and aggregation of chromatin

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-12608-9

7 January 2021

Salt-induced release of DNA from nucleosome core particles

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-12608-9

7 January 2021

The effect of DNA supercoiling on nucleosome structure and stability

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-12608-9

7 January 2021

Binding of ethidium to the nucleosome core particle. 2. Internal and external binding modes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28986581

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1038/S41598-017-12608-9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28986581%20AND%20SRC:MED&resulttype=core&format=json

1 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28986581%20AND%20SRC:MED&resulttype=core&format=json

1 April 2020

PubMed publication ID

28986581

1 reference