Probing Na(+)-induced changes in the HIV-1 TAR conformational dynamics using NMR residual dipolar couplings: new insights into the role of counterions and electrostatic interactions in adaptive recognition (Q42557759)

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scientific article published on 9 May 2007

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English	Probing Na(+)-induced changes in the HIV-1 TAR conformational dynamics using NMR residual dipolar couplings: new insights into the role of counterions and electrostatic interactions in adaptive recognition	scientific article published on 9 May 2007

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

2 November 2017

Probing Na(+)-induced changes in the HIV-1 TAR conformational dynamics using NMR residual dipolar couplings: new insights into the role of counterions and electrostatic interactions in adaptive recognition (English)

1 reference

Europe PubMed Central

PMC publication ID

2 November 2017

author name string

Anette Casiano-Negroni

1

1 reference

Europe PubMed Central

PMC publication ID

2 November 2017

Xiaoyan Sun

2

1 reference

Europe PubMed Central

PMC publication ID

2 November 2017

Hashim M Al-Hashimi

3

1 reference

Europe PubMed Central

PMC publication ID

2 November 2017

language of work or name

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publication date

9 May 2007

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Europe PubMed Central

PMC publication ID

2 November 2017

1 reference

Europe PubMed Central

PMC publication ID

2 November 2017

46

1 reference

Europe PubMed Central

PMC publication ID

2 November 2017

22

1 reference

Europe PubMed Central

PMC publication ID

2 November 2017

6525-6535

1 reference

Europe PubMed Central

PMC publication ID

2 November 2017

Interplay of 'induced fit' and preorganization in the ligand induced folding of the aptamer domain of the guanine binding riboswitch

1 reference

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The role of positively charged amino acids and electrostatic interactions in the complex of U1A protein and U1 hairpin II RNA

1 reference

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Conformational dynamics of RNA-peptide binding: a molecular dynamics simulation study

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Weak alignment NMR: a hawk-eyed view of biomolecular structure

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Dynamics-based amplification of RNA function and its characterization by using NMR spectroscopy

1 reference

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28 May 2018

Single-molecule RNA folding

1 reference

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An abundance of RNA regulators

1 reference

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Ions and RNA folding

1 reference

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Metal ions and RNA folding: a highly charged topic with a dynamic future

1 reference

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28 May 2018

HIV-1 TAR RNA: the target of molecular interactions between the virus and its host

1 reference

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Argininamide binding arrests global motions in HIV-1 TAR RNA: comparison with Mg2+-induced conformational stabilization

1 reference

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28 May 2018

A guide to ions and RNA structure

1 reference

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Rational design of inhibitors of HIV-1 TAR RNA through the stabilisation of electrostatic "hot spots"

1 reference

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28 May 2018

On secondary structure rearrangements and equilibria of small RNAs.

1 reference

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28 May 2018

Targeting the HIV Trans‐Activation Responsive Region—Approaches Towards RNA‐Binding Drugs

1 reference

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28 May 2018

Using pyrene-labeled HIV-1 TAR to measure RNA-small molecule binding

1 reference

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28 May 2018

Electrostatic interactions in a peptide--RNA complex.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3319146

28 May 2018

Mg2+-induced variations in the conformation and dynamics of HIV-1 TAR RNA probed using NMR residual dipolar couplings

1 reference

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28 May 2018

The bulge region of HIV-1 TAR RNA binds metal ions in solution.

1 reference

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28 May 2018

RNA as a target for drug design, the example of Tat-TAR interaction.

1 reference

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28 May 2018

Structure of TAR RNA complexed with a Tat-TAR interaction nanomolar inhibitor that was identified by computational screening

1 reference

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Towards structural genomics of RNA: rapid NMR resonance assignment and simultaneous RNA tertiary structure determination using residual dipolar couplings

1 reference

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28 May 2018

Mg2+-dependent conformational change of RNA studied by fluorescence correlation and FRET on immobilized single molecules.

1 reference

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28 May 2018

Residual dipolar couplings: synergy between NMR and structural genomics

1 reference

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Structural and dynamic analysis of residual dipolar coupling data for proteins

1 reference

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Current topics in RNA-protein recognition: control of specificity and biological function through induced fit and conformational capture

1 reference

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NMR structures of biomolecules using field oriented media and residual dipolar couplings

1 reference

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Induced fit in RNA-protein recognition

1 reference

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Filamentous bacteriophage for aligning RNA, DNA, and proteins for measurement of nuclear magnetic resonance dipolar coupling interactions

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Structural rearrangements of HIV-1 Tat-responsive RNA upon binding of neomycin B

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Order matrix analysis of residual dipolar couplings using singular value decomposition.

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A 1.3-A resolution crystal structure of the HIV-1 trans-activation response region RNA stem reveals a metal ion-dependent bulge conformation

1 reference

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Direct measurement of distances and angles in biomolecules by NMR in a dilute liquid crystalline medium

1 reference

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Structure of HIV-1 TAR RNA in the absence of ligands reveals a novel conformation of the trinucleotide bulge

1 reference

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Electrostatic interactions modulate the RNA-binding and transactivation specificities of the human immunodeficiency virus and simian immunodeficiency virus Tat proteins

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Fragments of the HIV-1 Tat protein specifically bind TAR RNA.

1 reference

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Molecular dynamics simulation studies of induced fit and conformational capture in U1A-RNA binding: do molecular substates code for specificity?

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https://pubmed.ncbi.nlm.nih.gov/17488097

12 December 2020

based on heuristic

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Impact of static and dynamic A-form heterogeneity on the determination of RNA global structural dynamics using NMR residual dipolar couplings

1 reference

https://pubmed.ncbi.nlm.nih.gov/17488097

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Conformation of the TAR RNA-Arginine Complex by NMR Spectroscopy

1 reference

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based on heuristic

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Bulge-induced bends in RNA: quantification by transient electric birefringence

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based on heuristic

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Simulations of the dynamics at an RNA-protein interface

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based on heuristic

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Variation of molecular alignment as a means of resolving orientational ambiguities in protein structures from dipolar couplings

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https://pubmed.ncbi.nlm.nih.gov/17488097

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based on heuristic

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EPR spectroscopic analysis of TAR RNA–metal ion interactions

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based on heuristic

inferred from PubMed ID database lookup

Probing motions between equivalent RNA domains using magnetic field induced residual dipolar couplings: accounting for correlations between motions and alignment

1 reference

https://pubmed.ncbi.nlm.nih.gov/17488097

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The role of coherence transfer efficiency in design of TROSY-type multidimensional NMR experiments

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based on heuristic

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Residual dipolar coupling derived orientational constraints on ligand geometry in a 53 kDa protein-ligand complex

1 reference

https://pubmed.ncbi.nlm.nih.gov/17488097

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based on heuristic

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NMR solution structure determination of RNAs

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https://pubmed.ncbi.nlm.nih.gov/17488097

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1021/BI700335N

1 reference

Europe PubMed Central

PMC publication ID

2 November 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

2 November 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

2 November 2017

ResearchGate publication ID

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