Coding region structural heterogeneity and turnover of transcription start sites contribute to divergence in expression between duplicate genes (Q42610549)

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scientific article published on 28 January 2009

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English	Coding region structural heterogeneity and turnover of transcription start sites contribute to divergence in expression between duplicate genes	scientific article published on 28 January 2009

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

3 November 2017

Coding region structural heterogeneity and turnover of transcription start sites contribute to divergence in expression between duplicate genes (English)

1 reference

Europe PubMed Central

PMC publication ID

3 November 2017

author name string

Chungoo Park

1

1 reference

Europe PubMed Central

PMC publication ID

3 November 2017

Kateryna D Makova

2

1 reference

Europe PubMed Central

PMC publication ID

3 November 2017

publication date

28 January 2009

1 reference

Europe PubMed Central

PMC publication ID

3 November 2017

1 reference

Europe PubMed Central

PMC publication ID

3 November 2017

10

1 reference

Europe PubMed Central

PMC publication ID

3 November 2017

1

1 reference

Europe PubMed Central

PMC publication ID

3 November 2017

R10

1 reference

Europe PubMed Central

PMC publication ID

3 November 2017

Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution.

1 reference

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27 May 2018

Preferential subfunctionalization of slow-evolving genes after allopolyploidization in Xenopus laevis

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Fast evolution of core promoters in primate genomes

1 reference

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27 May 2018

The UCSC Genome Browser Database: 2008 update

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The genome-wide determinants of human and chimpanzee microsatellite evolution

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A macaque's-eye view of human insertions and deletions: differences in mechanisms

1 reference

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Promoting transcriptome diversity

1 reference

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Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

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Distinct class of putative "non-conserved" promoters in humans: comparative studies of alternative promoters of human and mouse genes

1 reference

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External factors accelerate expression divergence between duplicate genes

1 reference

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NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

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The next generation of microarray research: applications in evolutionary and ecological genomics.

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Heterotachy in mammalian promoter evolution

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Genome-wide analysis of mammalian promoter architecture and evolution

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Genome-wide analysis of core promoter elements from conserved human and mouse orthologous pairs

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Role of positive selection in the retention of duplicate genes in mammalian genomes

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27 May 2018

Rapid and asymmetric divergence of duplicate genes in the human gene coexpression network

1 reference

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Hearing silence: non-neutral evolution at synonymous sites in mammals

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Comprehensive analysis of transcriptional promoter structure and function in 1% of the human genome

1 reference

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Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes

1 reference

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27 May 2018

Expression divergence between duplicate genes

1 reference

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27 May 2018

A high-resolution map of active promoters in the human genome

1 reference

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Phylogenetic reconstruction of ancestral character states for gene expression and mRNA splicing data

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Genome cluster database. A sequence family analysis platform for Arabidopsis and rice

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27 May 2018

Functional genomic analysis of the rates of protein evolution

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Gene identification signature (GIS) analysis for transcriptome characterization and genome annotation

1 reference

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27 May 2018

Rapid evolution of expression and regulatory divergences after yeast gene duplication

1 reference

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Highly conserved upstream sequences for transcription factor genes and implications for the regulatory network

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27 May 2018

Duplication and divergence: the evolution of new genes and old ideas

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The altered evolutionary trajectories of gene duplicates

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Gene expression intensity shapes evolutionary rates of the proteins encoded by the vertebrate genome

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27 May 2018

Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions

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cis-Regulatory and protein evolution in orthologous and duplicate genes

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Gene duplication: the genomic trade in spare parts

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Integrative annotation of 21,037 human genes validated by full-length cDNA clones

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A gene atlas of the mouse and human protein-encoding transcriptomes

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The structure and early evolution of recently arisen gene duplicates in the Caenorhabditis elegans genome.

1 reference

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GenBank: update

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Organismal complexity, protein complexity, and gene duplicability

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Complex controls: the role of alternative promoters in mammalian genomes

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Transposable elements in mammals promote regulatory variation and diversification of genes with specialized functions

1 reference

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27 May 2018

Asymmetric sequence divergence of duplicate genes

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2687787

27 May 2018

Different evolutionary patterns between young duplicate genes in the human genome

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Congruence of tissue expression profiles from Gene Expression Atlas, SAGEmap and TissueInfo databases

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Divergence in the spatial pattern of gene expression between human duplicate genes

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27 May 2018

Identification and functional analysis of human transcriptional promoters

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2687787

27 May 2018

Origin of a substantial fraction of human regulatory sequences from transposable elements

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AVID: A global alignment program

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Rapid divergence in expression between duplicate genes inferred from microarray data

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27 May 2018

Splitting pairs: the diverging fates of duplicated genes

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Selection and gene duplication: a view from the genome

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27 May 2018

Evolutionary rate in the protein interaction network

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An efficient algorithm for large-scale detection of protein families

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The evolutionary fate and consequences of duplicate genes

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Decoupled evolution of coding region and mRNA expression patterns after gene duplication: implications for the neutralist-selectionist debate

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The probability of duplicate gene preservation by subfunctionalization

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Twilight zone of protein sequence alignments

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

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A burst of protein sequence evolution and a prolonged period of asymmetric evolution follow gene duplication in yeast

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The role of cis-regulatory motifs and genetical control of expression in the divergence of yeast duplicate genes.

1 reference

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A single determinant dominates the rate of yeast protein evolution

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Significant impact of protein dispensability on the instantaneous rate of protein evolution

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Extent of gene duplication in the genomes of Drosophila, nematode, and yeast

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Highly expressed genes in yeast evolve slowly.

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Slow molecular clocks in Old World monkeys, apes, and humans

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https://pubmed.ncbi.nlm.nih.gov/19175934

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolution of cis-regulatory elements in duplicated genes of yeast

1 reference

https://pubmed.ncbi.nlm.nih.gov/19175934

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Determinants of substitution rates in mammalian genes: expression pattern affects selection intensity but not mutation rate

1 reference

https://pubmed.ncbi.nlm.nih.gov/19175934

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transposable elements as a significant source of transcription regulating signals

1 reference

https://pubmed.ncbi.nlm.nih.gov/19175934

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/GB-2009-10-1-R10

1 reference

Europe PubMed Central

PMC publication ID

3 November 2017

Dimensions Publication ID

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/gb-2009-10-1-r10

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

3 November 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

3 November 2017

ResearchGate publication ID

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