RNABC: forward kinematics to reduce all-atom steric clashes in RNA backbone (Q42866758)

8 November 2017

RNABC: forward kinematics to reduce all-atom steric clashes in RNA backbone (English)

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8 November 2017

6

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8 November 2017

2

Gary Kapral

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8 November 2017

Xueyi Wang

1

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8 November 2017

Laura Murray

series ordinal

3

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8 November 2017

David Richardson

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4

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8 November 2017

Jane Richardson

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8 November 2017

31 March 2007

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Journal of Mathematical Biology

8 November 2017

26

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based on heuristic

inferred from page(s)

published in

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8 November 2017

56

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8 November 2017

1-2

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8 November 2017

253-278

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maintained by WikiProject

8 November 2017

WikiProject Mathematics

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Structural basis of glmS ribozyme activation by glucosamine-6-phosphate

27 May 2018

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27 May 2018

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27 May 2018

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27 May 2018

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27 May 2018

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27 May 2018

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Fewer Genes, More Noncoding RNA

27 May 2018

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A test of enhancing model accuracy in high-throughput crystallography

27 May 2018

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27 May 2018

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Genome-wide non-mendelian inheritance of extra-genomic information in Arabidopsis

27 May 2018

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Perspective: machines for RNAi

27 May 2018

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Crystal structure of a phage Twort group I ribozyme-product complex

27 May 2018

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The new CCP4 Coordinate Library as a toolkit for the design of coordinate-related applications in protein crystallography.

27 May 2018

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27 May 2018

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27 May 2018

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Structure of a natural guanine-responsive riboswitch complexed with the metabolite hypoxanthine

27 May 2018

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MOLPROBITY: structure validation and all-atom contact analysis for nucleic acids and their complexes

27 May 2018

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Riboswitches exert genetic control through metabolite-induced conformational change

27 May 2018

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Crystal structure of a self-splicing group I intron with both exons

27 May 2018

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Telomerase RNA structure and function: implications for dyskeratosis congenita.

27 May 2018

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RNA conformational classes

27 May 2018

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The common and the distinctive features of the bulged-G motif based on a 1.04 A resolution RNA structure

27 May 2018

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RNA backbone is rotameric

27 May 2018

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Structure of HCV IRES domain II determined by NMR

27 May 2018

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RNA structure comparison, motif search and discovery using a reduced representation of RNA conformational space

27 May 2018

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Crystal structure of NF- B (p50)2 complexed to a high-affinity RNA aptamer

27 May 2018

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Structures of five antibiotics bound at the peptidyl transferase center of the large ribosomal subunit

27 May 2018

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Cyclic coordinate descent: A robotics algorithm for protein loop closure.

27 May 2018

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Structure validation by Calpha geometry: phi,psi and Cbeta deviation

27 May 2018

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Electron microscopy of functional ribosome complexes

27 May 2018

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Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression

27 May 2018

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PHENIX: building new software for automated crystallographic structure determination

27 May 2018

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Automated structure solution, density modification and model building

27 May 2018

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The chemical repertoire of natural ribozymes

27 May 2018

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SCOR: a Structural Classification of RNA database

27 May 2018

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Non-coding RNAs: the architects of eukaryotic complexity

27 May 2018

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The kink-turn: a new RNA secondary structure motif

27 May 2018

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Crystal structure of the ribosome at 5.5 A resolution

27 May 2018

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Structure of the 30S ribosomal subunit

27 May 2018

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Structure of functionally activated small ribosomal subunit at 3.3 angstroms resolution

27 May 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2153530

The structural basis of ribosome activity in peptide bond synthesis

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2153530

The complete atomic structure of the large ribosomal subunit at 2.4 A resolution

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2153530

The crystal structure of yeast phenylalanine tRNA at 2.0 A resolution: cleavage by Mg(2+) in 15-year old crystals

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2153530

27 May 2018

The Protein Data Bank

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Automated protein model building combined with iterative structure refinement

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2153530

XtalView/Xfit--A versatile program for manipulating atomic coordinates and electron density

27 May 2018

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Flipping the switch to an active spliceosome

27 May 2018

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Asparagine and glutamine: using hydrogen atom contacts in the choice of side-chain amide orientation

27 May 2018

1 reference

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Visualizing and quantifying molecular goodness-of-fit: small-probe contact dots with explicit hydrogen atoms

27 May 2018

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Crystal structure of a hepatitis delta virus ribozyme

27 May 2018

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Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

27 May 2018

1 reference

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NMR structure of a classical pseudoknot: interplay of single- and double-stranded RNA

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2153530

RNA-RNA interactions in the spliceosome: unraveling the ties that bind

27 May 2018

1 reference

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Central Dogma of Molecular Biology

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2153530

Improved methods for building protein models in electron density maps and the location of errors in these models

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2153530

Stereochemical quality of protein structure coordinates

27 May 2018

1 reference

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The nucleic acid database. A comprehensive relational database of three-dimensional structures of nucleic acids

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2153530

Three-dimensional structure of a transfer rna in two crystal forms

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2153530

The RNA Ontology Consortium: an open invitation to the RNA community

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2153530

New parameters for the refinement of nucleic acid-containing structures

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2153530

The roles of ribosomal proteins in the structure assembly, and evolution of the large ribosomal subunit

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2153530

A complete conformational map for RNA

16 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17401565

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Crystal structure of the RNA component of bacterial ribonuclease P

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17401565

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1007/S00285-007-0082-X

1 reference

8 November 2017

1 reference

8 November 2017

PubMed publication ID

17401565

1 reference