Formation of metastable RNA structures by sequential folding during transcription: time-resolved structural analysis of potato spindle tuber viroid (-)-stranded RNA by temperature-gradient gel electrophoresis (Q43206426)

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scientific article published in April 1999

Language	Label	Description	Also known as
English	Formation of metastable RNA structures by sequential folding during transcription: time-resolved structural analysis of potato spindle tuber viroid (-)-stranded RNA by temperature-gradient gel electrophoresis	scientific article published in April 1999

Statements

scholarly article

1 reference

Europe PubMed Central

PMC publication ID

16 November 2017

Formation of metastable RNA structures by sequential folding during transcription: time-resolved structural analysis of potato spindle tuber viroid (-)-stranded RNA by temperature-gradient gel electrophoresis (English)

1 reference

Europe PubMed Central

PMC publication ID

16 November 2017

electrophoresis

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based on heuristic

inferred from title

potato spindle tuber viroid

object named as

potato spindle tuber viroid

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based on heuristic

inferred from title

author name string

Repsilber D

1

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Europe PubMed Central

PMC publication ID

16 November 2017

Wiese S

2

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Europe PubMed Central

PMC publication ID

16 November 2017

Rachen M

3

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Europe PubMed Central

PMC publication ID

16 November 2017

Schröder AW

4

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Europe PubMed Central

PMC publication ID

16 November 2017

Riesner D

5

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Europe PubMed Central

PMC publication ID

16 November 2017

Steger G

6

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Europe PubMed Central

PMC publication ID

16 November 2017

language of work or name

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publication date

1 April 1999

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Europe PubMed Central

PMC publication ID

16 November 2017

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Europe PubMed Central

PMC publication ID

16 November 2017

5

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Europe PubMed Central

PMC publication ID

16 November 2017

4

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Europe PubMed Central

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16 November 2017

574-584

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Europe PubMed Central

PMC publication ID

16 November 2017

A proposed scheme for viroid classification and nomenclature

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1369783

25 May 2018

New PC versions of the kinetic-simulation and fitting programs, KINSIM and FITSIM.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1369783

25 May 2018

Viroid processing: switch from cleavage to ligation is driven by a change from a tetraloop to a loop E conformation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1369783

25 May 2018

Coupling of rRNA transcription and ribosomal assembly in vivo. Formation of active ribosomal subunits in Escherichia coli requires transcription of rRNA genes by host RNA polymerase which cannot be replaced by bacteriophage T7 RNA polymerase.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1369783

25 May 2018

Multiple pathways of reversion in viroids for conservation of structural elements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1369783

25 May 2018

RNAII transcribed by IPTG-induced T7 RNA polymerase is non-functional as a replication primer for ColE1-type plasmids in Escherichia coli

1 reference

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25 May 2018

Only one of four possible secondary structures of the central conserved region of potato spindle tuber viroid is a substrate for processing in a potato nuclear extract

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1369783

25 May 2018

Cloning and expression of the gene for bacteriophage T7 RNA polymerase

1 reference

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25 May 2018

Sequential folding of a messenger RNA molecule

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1369783

25 May 2018

Conformational Transitions in Viroids and Virusoids: Comparison of Results from Energy Minimization Algorithm and from Experimental Data

1 reference

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25 May 2018

Characterization of T7-specific ribonucleic acid polymerase. IV. Resolution of the major in vitro transcripts by gel electrophoresis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1369783

25 May 2018

Characterization of T7-specific ribonucleic acid polymerase. 1. General properties of the enzymatic reaction and the template specificity of the enzyme.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1369783

25 May 2018

Structure of viroid replicative intermediates: physico-chemical studies on SP6 transcripts of cloned oligomeric potato spindle tuber viroid

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1369783

25 May 2018

Imaging of viroids in nuclei from tomato leaf tissue by in situ hybridization and confocal laser scanning microscopy.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1369783

25 May 2018

Temperature-gradient gel electrophoresis. Thermodynamic analysis of nucleic acids and proteins in purified form and in cellular extracts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1369783

25 May 2018

Formation of a thermodynamically metastable structure containing hairpin II is critical for infectivity of potato spindle tuber viroid RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1369783

25 May 2018

Conformation of viroids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1369783

25 May 2018

Viroid replication is inhibited by alpha-amanitin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1369783

25 May 2018

Nucleotide sequence and secondary structure of potato spindle tuber viroid

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1369783

25 May 2018

Fine structure melting of viroids as studied by kinetic methods

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1369783

25 May 2018

Temperature-gradient gel electrophoresis of nucleic acids: analysis of conformational transitions, sequence variations, and protein-nucleic acid interactions.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1369783

25 May 2018

Analysis of numerical methods for computer simulation of kinetic processes: development of KINSIM--a flexible, portable system.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1369783

15 August 2018

Sequential folding of transfer RNA. A nuclear magnetic resonance study of successively longer tRNA fragments with a common 5' end

1 reference

https://pubmed.ncbi.nlm.nih.gov/10199573

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Studies of in vitro transcription by calf thymus RNA polymerase II using a novel duplex DNA template

1 reference

https://pubmed.ncbi.nlm.nih.gov/10199573

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A two-dimensional electrophoretic technique for the detection of circular viroids and virusoids

1 reference

https://pubmed.ncbi.nlm.nih.gov/10199573

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Analysis of RNA structures by temperature-gradient gel electrophoresis: viroid replication and processing

1 reference

https://pubmed.ncbi.nlm.nih.gov/10199573

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A scheme for viroid classification

1 reference

https://pubmed.ncbi.nlm.nih.gov/10199573

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A mechanism of formation of a persistent hybrid between elongating RNA and template DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/10199573

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cell-to-cell movement of potato spindle tuber viroid

1 reference

https://pubmed.ncbi.nlm.nih.gov/10199573

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1017/S1355838299982018

1 reference

Europe PubMed Central

PMC publication ID

16 November 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

16 November 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

16 November 2017

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