PoPMuSiC, an algorithm for predicting protein mutant stability changes: application to prion proteins. (Q52067226)

21 April 2018

title

PoPMuSiC, an algorithm for predicting protein mutant stability changes: application to prion proteins. (English)

1 reference

21 April 2018

0 references

Gilis D

1

1 reference

21 April 2018

Rooman M

series ordinal

2

1 reference

21 April 2018

publication date

1 December 2000

1 reference

21 April 2018

Protein Engineering Design and Selection

published in

1 reference

21 April 2018

volume

13

1 reference

21 April 2018

issue

12

1 reference

21 April 2018

page(s)

849-856

1 reference

21 April 2018

The Protein Data Bank: a computer-based archival file for macromolecular structures

cites work

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.12.849

A Method to Identify Protein Sequences That Fold into a Known Three-Dimensional Structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.12.849

Pathologic conformations of prion proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.12.849

Response of a protein structure to cavity-creating mutations and its relation to the hydrophobic effect

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.12.849

Stability changes upon mutation of solvent-accessible residues in proteins evaluated by database-derived potentials.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.12.849

How N-linked oligosaccharides affect glycoprotein folding in the endoplasmic reticulum

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.12.849

Solution structure of a 142-residue recombinant prion protein corresponding to the infectious fragment of the scrapie isoform

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.12.849

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.12.849

Evidence for protein X binding to a discontinuous epitope on the cellular prion protein during scrapie prion propagation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.12.849

Factors influencing the ability of knowledge-based potentials to identify native sequence-structure matches

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.12.849

Predicting protein mutant energetics by self-consistent ensemble optimization.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.12.849

Testing homology modeling on mutant proteins: predicting structural and thermodynamic effects in the Ala98-->Val mutants of T4 lysozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.12.849

Accurate prediction of the stability and activity effects of site-directed mutagenesis on a protein core

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.12.849

Influence of amino acid substitutions related to inherited human prion diseases on the thermodynamic stability of the cellular prion protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.12.849

Evidence for the role of PrP(C) helix 1 in the hydrophilic seeding of prion aggregates

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.12.849

Intrinsic secondary structure propensities of the amino acids, using statistical phi-psi matrices: comparison with experimental scales.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.12.849

Desk-top analysis of the structural stability of various point mutations introduced into ribonuclease H.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.12.849

Conversion of alpha-helices into beta-sheets features in the formation of the scrapie prion proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.12.849

Semipreparative chromatographic method to purify the normal cellular isoform of the prion protein in nondenatured form.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.12.849

Molecular biology of prion diseases

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.12.849

21 January 2018

Prion Protein Biology

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.12.849

Evaluating the energetics of empty cavities and internal mutations in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.12.849

NMR structure of the mouse prion protein domain PrP(121-231)

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.12.849

Prediction of protein backbone conformation based on seven structure assignments. Influence of local interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.12.849

Extracting information on folding from the amino acid sequence: accurate predictions for protein regions with preferred conformation in the absence of tertiary interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.12.849

Hydrophobicity of amino acid residues in globular proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.12.849

Thermal stability and conformational transitions of scrapie amyloid (prion) protein correlate with infectivity

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.12.849

Contributions of the large hydrophobic amino acids to the stability of staphylococcal nuclease

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.12.849

Knowledge-based potentials for proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.12.849

Prion propagation in mice expressing human and chimeric PrP transgenes implicates the interaction of cellular PrP with another protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.12.849

Simulation analysis of the stability mutant R96H of T4 lysozyme.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.12.849

Prediction of the stability of protein mutants based on structural environment-dependent amino acid substitution and propensity tables

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.12.849

Automatic classification and analysis of alpha alpha-turn motifs in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.12.849

NMR solution structure of the human prion protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.12.849

Prediction of the activity and stability effects of site-directed mutagenesis on a protein core

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.12.849

Sequence statistics reliably predict stabilizing mutations in a protein domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.12.849

Free energy calculations by computer simulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.12.849

Quantitative structure-function and structure-stability relationships of purposely modified proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.12.849

Predicting protein stability changes upon mutation using database-derived potentials: solvent accessibility determines the importance of local versus non-local interactions along the sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.12.849

Polar and nonpolar atomic environments in the protein core: implications for folding and binding

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.12.849

Blockade of glycosylation promotes acquisition of scrapie-like properties by the prion protein in cultured cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.12.849

Protein stability for single substitution mutants and the extent of local compactness in the denatured state

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.12.849

The folding of an enzyme. II. Substructure of barnase and the contribution of different interactions to protein stability

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.12.849

Position-dependent protein mutant profile based on mean force field calculation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.12.849

On the Fundamental Nature and Evolution of the Genetic Code

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F13.12.849

10.1093/PROTEIN/13.12.849

21 January 2018

Identifiers

DOI

1 reference

21 April 2018

1 reference

21 April 2018