Mutagenesis of DsbAss is Crucial for the Signal Recognition Particle Mechanism in : Insights from Molecular Dynamics Simulations (Q66680689)

From Wikidata

Jump to navigation Jump to search

scientific article published on 3 April 2019

Language	Label	Description	Also known as
English	Mutagenesis of DsbAss is Crucial for the Signal Recognition Particle Mechanism in : Insights from Molecular Dynamics Simulations	scientific article published on 3 April 2019

Statements

scholarly article

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30987187%20AND%20SRC:MED&resulttype=core&format=json

3 May 2020

Mutagenesis of DsbAss is Crucial for the Signal Recognition Particle Mechanism in Escherichia coli: Insights from Molecular Dynamics Simulations (English)

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30987187%20AND%20SRC:MED&resulttype=core&format=json

3 May 2020

molecular dynamics simulation

0 references

2

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30987187%20AND%20SRC:MED&resulttype=core&format=json

3 May 2020

Muhammad Usman Mirza

3

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30987187%20AND%20SRC:MED&resulttype=core&format=json

3 May 2020

Matheus Froeyen

5

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30987187%20AND%20SRC:MED&resulttype=core&format=json

3 May 2020

author name string

Faiza Gul Durrani

1

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30987187%20AND%20SRC:MED&resulttype=core&format=json

3 May 2020

Naheed Nazly Kaderbhai

4

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30987187%20AND%20SRC:MED&resulttype=core&format=json

3 May 2020

Mahjabeen Saleem

6

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30987187%20AND%20SRC:MED&resulttype=core&format=json

3 May 2020

language of work or name

0 references

publication date

3 April 2019

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30987187%20AND%20SRC:MED&resulttype=core&format=json

3 May 2020

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30987187%20AND%20SRC:MED&resulttype=core&format=json

3 May 2020

9

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30987187%20AND%20SRC:MED&resulttype=core&format=json

3 May 2020

4

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30987187%20AND%20SRC:MED&resulttype=core&format=json

3 May 2020

133

0 references

copyright license

Creative Commons Attribution 4.0 International

3 April 2019

1 reference

April 2022 Public Data File from Crossref

copyright status

0 references

A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The methionine-rich domain of the 54 kDa subunit of signal recognition particle is sufficient for the interaction with signal sequences

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The E. coli ffh gene is necessary for viability and efficient protein export.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The crisis in antibiotic resistance

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterization of a periplasmic thiol:disulfide interchange protein required for the functional maturation of secreted virulence factors of Vibrio cholerae

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The 54-kD protein of signal recognition particle contains a methionine-rich RNA binding domain

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification and characterization of an Escherichia coli gene required for the formation of correctly folded alkaline phosphatase, a periplasmic enzyme

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The signal sequence interacts with the methionine-rich domain of the 54-kD protein of signal recognition particle

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cleavage of Structural Proteins during the Assembly of the Head of Bacteriophage T4

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Signal sequence recognition and protein targeting to the endoplasmic reticulum membrane

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mammalian and Escherichia coli signal recognition particles

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Why is DsbA such an oxidizing disulfide catalyst?

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Crystal structure of the signal sequence binding subunit of the signal recognition particle

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Optimization of Inclusion Body Solubilization and Renaturation of Recombinant Human Growth Hormone from Escherichia coli

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Expressing genes in different Escherichia coli compartments

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Key role for DsbA in cell-to-cell spread of Shigella flexneri, permitting secretion of Ipa proteins into interepithelial protrusions

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural and energetic analysis of RNA recognition by a universally conserved protein from the signal recognition particle

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The targeting pathway of Escherichia coli presecretory and integral membrane proteins is specified by the hydrophobicity of the targeting signal

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DsbA and DsbC are required for secretion of pertussis toxin by Bordetella pertussis

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mapping the signal sequence-binding site on SRP reveals a significant role for the NG domain.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Insights into protein-protein binding by binding free energy calculation and free energy decomposition for the Ras-Raf and Ras-RalGDS complexes.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structure, function and evolution of the signal recognition particle

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The DsbA signal sequence directs efficient, cotranslational export of passenger proteins to the Escherichia coli periplasm via the signal recognition particle pathway

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

ClusPro: an automated docking and discrimination method for the prediction of protein complexes

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Heterodimeric GTPase Core of the SRP Targeting Complex

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Snapshots of DsbA in action: detection of proteins in the process of oxidative folding

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Periplasmic expression of human growth hormone via plasmid vectors containing the lambdaPL promoter: use of HPLC for product quantification.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural insights into the signal recognition particle

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

UCSF Chimera--a visualization system for exploratory research and analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Unraveling the interface of signal recognition particle and its receptor by using chemical cross-linking and tandem mass spectrometry

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Recombinant protein secretion in Escherichia coli

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Targeting proteins to membranes: structure of the signal recognition particle.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular dynamics and protein function

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The HHpred interactive server for protein homology detection and structure prediction

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

PatchDock and SymmDock: servers for rigid and symmetric docking

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Amber biomolecular simulation programs

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The bacterial twin-arginine translocation pathway

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structure of the E. coli signal recognition particle bound to a translating ribosome.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular cloning, characterization, and expression studies of water buffalo (Bubalus bubalis) somatotropin

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Glycine residues in the hydrophobic core of the GspB signal sequence route export toward the accessory Sec pathway

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

FireDock: fast interaction refinement in molecular docking

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Interaction of signal-recognition particle 54 GTPase domain and signal-recognition particle RNA in the free signal-recognition particle

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The biology and future prospects of antivirulence therapies

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular simulations of protein dynamics: new windows on mechanisms in biology

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DsbA plays a critical and multifaceted role in the production of secreted virulence factors by the phytopathogen Erwinia carotovora subsp. atroseptica.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Signal peptidase I-mediated processing of an engineered mammalian cytochrome b(5) precursor is an exocytoplasmic post-translocational event in Escherichia coli

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DSB proteins and bacterial pathogenicity.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Long-timescale molecular dynamics simulations of protein structure and function.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterization of two homologous disulfide bond systems involved in virulence factor biogenesis in uropathogenic Escherichia coli CFT073.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Detecting folding intermediates of a protein as it passes through the bacterial translocation channel

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MolProbity: all-atom structure validation for macromolecular crystallography

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Recognition of a signal peptide by the signal recognition particle

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Docking and scoring protein interactions: CAPRI 2009

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structure and function of DsbA, a key bacterial oxidative folding catalyst

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural basis of signal-sequence recognition by the signal recognition particle

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural and dynamic determinants of protein-peptide recognition

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Signal recognition particle: an essential protein-targeting machine

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Targeting virulence not viability in the search for future antibacterials.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Protein structure modeling with MODELLER.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The code for directing proteins for translocation across ER membrane: SRP cotranslationally recognizes specific features of a signal sequence.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

ENCoM server: exploring protein conformational space and the effect of mutations on protein function and stability

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The global threat of antimicrobial resistance: science for intervention

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Expression and rapid purification of recombinant biologically active ovine growth hormone with DsbA targeting to Escherichia coli inner membrane

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ribosome binding induces repositioning of the signal recognition particle receptor on the translocon

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

PTRAJ and CPPTRAJ: Software for Processing and Analysis of Molecular Dynamics Trajectory Data

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Antibacterial drug discovery in the resistance era.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structures of the E. coli translating ribosome with SRP and its receptor and with the translocon

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Bacterial Secretion Systems: An Overview

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural Basis for Conserved Regulation and Adaptation of the Signal Recognition Particle Targeting Complex

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Targeting Bacterial Dsb Proteins for the Development of Anti-Virulence Agents

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Towards peptide vaccines against Zika virus: Immunoinformatics combined with molecular dynamics simulations to predict antigenic epitopes of Zika viral proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Antibiotic resistance in Staphylococcus aureus. Current status and future prospects

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular Dynamics Simulations Are Redefining Our View of Peptides Interacting with Biological Membranes.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Antigenic Peptide Prediction From E6 and E7 Oncoproteins of HPV Types 16 and 18 for Therapeutic Vaccine Design Using Immunoinformatics and MD Simulation Analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/30987187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.3390/BIOM9040133

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30987187%20AND%20SRC:MED&resulttype=core&format=json

3 May 2020

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30987187%20AND%20SRC:MED&resulttype=core&format=json

3 May 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30987187%20AND%20SRC:MED&resulttype=core&format=json

3 May 2020

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q66680689&oldid=1886860298"