A software toolkit for the interconversion of standard data models for phenotypic data
Documentation: https://cnag-biomedical-informatics.github.io/convert-pheno-ui
Web APP Playground: https://convert-pheno.cnag.cat
CLI Source Code: https://github.com/cnag-biomedical-informatics/convert-pheno
convert-pheno-ui is a web-interface for the CPAN's module Convert::Pheno
which is a software toolkit for the interconversion of standard data models for phenotypic data.
-
Ideally a unix (GNU/Linux, MacOS) based distribution. Windows with WSL (Windows Subsystem for Linux) enabled or Docker Deskop should work as well - not tested
-
Docker and Docker compose installed
no SSL and user authentication
- git clone this repo and then navigate into the folder convert-pheno-ui
- rename the file example.env to .env and fill in the variables
- Run
docker compose up -d - Open your browser and go to
http://localhost:4173
SSL and keycloak-based user authentication
Convert-Pheno is designed to be run as a collection of microservices. Please consult dev_docs/how_to_self_host_w_keycloak_login_enabled.md how to prepare your environment and run the services.
The author requests that any published work that utilizes Convert-Pheno-UI includes a cite to the the following reference:
Rueda, M; Leist, IC et al., (2023). Convert-Pheno: A software toolkit for the interconversion of standard data models for phenotypic data [Software]. Available from https://github.com/cnag-biomedical-informatics/convert-pheno
Written by Ivo Christopher Leist, PhD student at CNAG https://www.cnag.eu.
Copyright (C) 2022-2023, Ivo Christopher Leist - CNAG.
GPLv3 - GNU General Public License v3.0