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DecodeGenetics

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  1. graphtyper graphtyper Public

    Population-scale genotyping using pangenome graphs

    C++ 171 20

  2. Ratatosk Ratatosk Public

    Hybrid error correction of long reads using colored de Bruijn graphs

    C++ 99 7

  3. svimmer svimmer Public

    Structural variant merging tool

    Python 46 9

  4. BamHash BamHash Public

    C++ 37 8

  5. popSTR popSTR Public

    PopSTR - A Population based microsatellite genotyper

    C++ 32 9

  6. LRS_SV_sets LRS_SV_sets Public

    VCF files of SVs using long-read sequencing (LRS).

    21 2

Repositories

Showing 10 of 28 repositories
  • PalssonEtAl_Nature_2024 Public

    Supplementary data for Nature publication: Complete human recombination maps

    DecodeGenetics/PalssonEtAl_Nature_2024’s past year of commit activity
    0 0 0 0 Updated Nov 1, 2024
  • Ratatosk Public

    Hybrid error correction of long reads using colored de Bruijn graphs

    DecodeGenetics/Ratatosk’s past year of commit activity
    C++ 99 BSD-2-Clause 7 0 0 Updated Sep 27, 2024
  • svimmer Public

    Structural variant merging tool

    DecodeGenetics/svimmer’s past year of commit activity
    Python 46 9 4 1 Updated Aug 23, 2024
  • Stefanssonetal-Nature-Genetics-2024 Public
    DecodeGenetics/Stefanssonetal-Nature-Genetics-2024’s past year of commit activity
    R 2 MIT 0 1 0 Updated Jun 19, 2024
  • graphtyper Public

    Population-scale genotyping using pangenome graphs

    DecodeGenetics/graphtyper’s past year of commit activity
    C++ 171 MIT 20 62 1 Updated Feb 29, 2024
  • popSTR Public

    PopSTR - A Population based microsatellite genotyper

    DecodeGenetics/popSTR’s past year of commit activity
    C++ 32 GPL-3.0 9 5 0 Updated Oct 23, 2023
  • gnonadd Public
    DecodeGenetics/gnonadd’s past year of commit activity
    R 1 0 0 0 Updated Sep 26, 2023
  • proteomics_comparison Public

    Supplementary code for the article "Large-scale plasma proteomics comparisons through genetics and disease associations"

    DecodeGenetics/proteomics_comparison’s past year of commit activity
    Python 4 0 0 0 Updated Aug 16, 2023
  • mDNM_analysisAndData Public

    Scripts for mDNM analysis and the data the analysis was run on.

    DecodeGenetics/mDNM_analysisAndData’s past year of commit activity
    R 1 MIT 0 0 0 Updated Aug 1, 2023
  • NCOurd Public

    Modelling Length Distributions of NCO Events and Gene Conversion Tracts

    DecodeGenetics/NCOurd’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Aug 16, 2022
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