This suit of scripts were developed based on LanGen_pipeline from @rojaff/LanGen_pipeline

Scripts in R for different analyses of Landscape Genomics using SNPS, VCF, or Genind objects. These scripts perform the following steps:

1. SNPs dataset filtering using PCadapt, sNMF, and TESS3 to outlier detection.

2. Assessment of population genetic structure using sNMF, DAPC, TESS3, and PCA.

3. Creating maps for ancestry coefficients from step 2.

4. Estimate Tajima's D, genetic diversity and genetic distance inter and intra populations, and preparing the input for NeEstimator (Effective Population Sizes).