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@ga4gh

Global Alliance for Genomics and Health

An international coalition, formed to enable the sharing of genomic and clinical data.

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  1. ga4gh-schemas ga4gh-schemas Public archive

    Models and APIs for Genomic data. RETIRED 2018-01-24

    Python 214 114

  2. benchmarking-tools benchmarking-tools Public

    Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls

    HTML 186 46

  3. ga4gh-server ga4gh-server Public archive

    Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24

    Python 96 93

  4. workflow-execution-service-schemas workflow-execution-service-schemas Public

    The WES API is a standard way to run and manage portable workflows.

    82 38

  5. task-execution-schemas task-execution-schemas Public

    80 28

  6. vrs vrs Public

    Extensible specification for representing and uniquely identifying biological sequence variation

    Jupyter Notebook 79 32

Repositories

Showing 10 of 124 repositories
  • pedigree-tools Public
    ga4gh/pedigree-tools’s past year of commit activity
    JavaScript 1 1 2 4 Updated Aug 19, 2024
  • refget Public

    GA4GH Refget specifications docs

    ga4gh/refget’s past year of commit activity
    HTML 14 7 24 2 Updated Aug 17, 2024
  • data-repository-service-schemas Public

    A repository for the schemas used for the Data Repository Service.

    ga4gh/data-repository-service-schemas’s past year of commit activity
    61 Apache-2.0 52 64 23 Updated Aug 17, 2024
  • vrs Public

    Extensible specification for representing and uniquely identifying biological sequence variation

    ga4gh/vrs’s past year of commit activity
    Jupyter Notebook 79 Apache-2.0 32 39 1 Updated Aug 15, 2024
  • va-spec Public

    An information model for representing variant annotations.

    ga4gh/va-spec’s past year of commit activity
    Jupyter Notebook 15 2 99 (2 issues need help) 1 Updated Aug 15, 2024
  • gk-pilot Public

    A pilot implementation of GKS Work Stream specifications.

    ga4gh/gk-pilot’s past year of commit activity
    Makefile 1 Apache-2.0 1 12 1 Updated Aug 15, 2024
  • cat-vrs Public

    A terminology and data model for describing categorical variation concepts.

    ga4gh/cat-vrs’s past year of commit activity
    Python 0 Apache-2.0 2 4 0 Updated Aug 14, 2024
  • gks-common Public

    Common classes and schemas used by all GKS specifications (ie. VR, VA, etc..)

    ga4gh/gks-common’s past year of commit activity
    Makefile 2 Apache-2.0 0 2 0 Updated Aug 14, 2024
  • data-security Public

    This is the repository for the GA4GH Data Security Work Stream, containing AAI and DSIP.

    ga4gh/data-security’s past year of commit activity
    Python 22 15 3 4 Updated Aug 13, 2024
  • gks-metaschema Public

    Tools and scripts for parsing the GKS standards metaschemas

    ga4gh/gks-metaschema’s past year of commit activity
    Python 0 Apache-2.0 2 3 1 Updated Aug 13, 2024
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