jmzTab-M: a reference parser, writer, and validator for the proteomics standards initiative mzTab 2.0 metabolomics standard

N Hoffmann, J Hartler, R Ahrends - Analytical chemistry, 2019 - ACS Publications
mzTab 2.0 for metabolomics (mzTab-M) is the most recent standard format developed in
collaboration by the Proteomics and Metabolomics Standards Initiatives including …

mzTab-M: a data standard for sharing quantitative results in mass spectrometry metabolomics

N Hoffmann, J Rein, T Sachsenberg, J Hartler… - Analytical …, 2019 - ACS Publications
Mass spectrometry (MS) is one of the primary techniques used for large-scale analysis of
small molecules in metabolomics studies. To date, there has been little data format …

jmzTab: a Java interface to the mzTab data standard

QW Xu, J Griss, R Wang, AR Jones, H Hermjakob… - …, 2014 - Wiley Online Library
mzTab is the most recent standard format developed by the Proteomics Standards Initiative.
mzTab is a flexible tab‐delimited file that can capture identification and quantification results …

Proposed minimum reporting standards for chemical analysis: chemical analysis working group (CAWG) metabolomics standards initiative (MSI)

LW Sumner, A Amberg, D Barrett, MH Beale, R Beger… - Metabolomics, 2007 - Springer
There is a general consensus that supports the need for standardized reporting of metadata
or information describing large-scale metabolomics and other functional genomics data sets …

The metabolomics workbench file status website: a metadata repository promoting FAIR principles of metabolomics data

CD Powell, HNB Moseley - BMC bioinformatics, 2023 - Springer
Background An updated version of the mwtab Python package for programmatic access to
the Metabolomics Workbench (MetabolomicsWB) data repository was released at the …

Proposed minimum reporting standards for chemical analysis

LW Summer, A Amberg, D Barrett, MH Beale, R Beger… - Metabolomics, 2007 - ars.usda.gov
Metabolomics, or functional genomics, is a new area of research that focuses on
characterizing the metabolites of a tissue or organism. Metabolomics has also been called …

SMetaS: A Sample Metadata Standardizer for Metabolomics

PL Bremer, O Fiehn - Metabolites, 2023 - mdpi.com
Metabolomics has advanced to an extent where it is desired to standardize and compare
data across individual studies. While past work in standardization has focused on data …

A Python library for FAIRer access and deposition to the Metabolomics Workbench Data Repository

A Smelter, HNB Moseley - Metabolomics, 2018 - Springer
Abstract Introduction The Metabolomics Workbench Data Repository is a public repository of
mass spectrometry and nuclear magnetic resonance data and metadata derived from a wide …

MET-IDEA version 2.06; improved efficiency and additional functions for mass spectrometry-based metabolomics data processing

Z Lei, H Li, J Chang, PX Zhao, LW Sumner - Metabolomics, 2012 - Springer
Met abolomics I on-based D ata E xtraction A lgorithm (MET-IDEA) is a computer program for
processing large-scale metabolomics data. MET-IDEA utilizes network Common Data Form …

Perspectives on Data Analysis in Metabolomics: Points of Agreement and Disagreement from the 2018 ASMS Fall Workshop

ES Baker, GJ Patti - Journal of The American Society for Mass …, 2019 - ACS Publications
In November 2018, the American Society for Mass Spectrometry hosted the Annual Fall
Workshop on informatic methods in metabolomics. The Workshop included sixteen lectures …