Methods to detect replication-dependent and replication-independent DNA structure-induced genetic instability (Q26859209)

Sally Gaddis

series ordinal

2

1 reference

Karen M. Vasquez

series ordinal

3

1 reference

language of work or name

1 reference

November 2013

1 reference

1 reference

64

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PubMed

issue

1

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PubMed

page(s)

67-72

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Modulation of ADAR1 editing activity by Z-RNA in vitro

PubMed

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3842213

The Zalpha domain from human ADAR1 binds to the Z-DNA conformer of many different sequences

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3842213

The intrinsic structure and stability of out-of-alternation base pairs in Z-DNA

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3842213

Methylation of the Z-DNA decamer d(GC)5 potentiates the formation of A-DNA: crystal structure of d(Gm5CGm5CGCGCGC)

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3842213

AT base pairs are less stable than GC base pairs in Z-DNA: the crystal structure of d(m5CGTAm5CG)

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3842213

Selective extraction of polyoma DNA from infected mouse cell cultures

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3842213

Conformational changes of non-B DNA.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3842213

ATR activation and replication fork restart are defective in FANCM-deficient cells

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3842213

Non-B DNA structure-induced genetic instability and evolution

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3842213

Methods to determine DNA structural alterations and genetic instability

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3842213

Models for chromosomal replication-independent non-B DNA structure-induced genetic instability

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3842213

Role of TLS DNA polymerases eta and kappa in processing naturally occurring structured DNA in human cells

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3842213

DNA structure-induced genomic instability in vivo

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3842213

Non-B DNA structure-induced genetic instability

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3842213

Z-DNA-forming sequences generate large-scale deletions in mammalian cells

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3842213

Naturally occurring H-DNA-forming sequences are mutagenic in mammalian cells

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3842213

Replication stalling at Friedreich's ataxia (GAA)n repeats in vivo.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3842213

Sequence-independent DNA binding and replication initiation by the human origin recognition complex

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3842213

Replication and expansion of trinucleotide repeats in yeast

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3842213

DNA methylation and Z-DNA formation as mediators of quantitative differences in the expression of alleles

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3842213

Orientation-dependent and sequence-specific expansions of CTG/CAG trinucleotide repeats in Saccharomyces cerevisiae

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3842213

Somatic heterogeneity of the CTG repeat in myotonic dystrophy is age and size dependent.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3842213

Formation of DNA triple helices inhibits DNA unwinding by the SV40 large T-antigen helicase

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3842213

Alignment and Sensitive Detection of DNA by a Moving Interface

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3842213

The chemistry and biology of left-handed Z-DNA.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3842213

28 September 2017

Unusual DNA structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3842213

A cis-acting transcription element of the c-myc gene can assume an H-DNA conformation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3842213

Sequence-specific functions of the early palindrome domain within the SV40 core origin of replication

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3842213

Cytosine methylation enhances Z-DNA formation in vivo

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3842213

DNA structure, mutations, and human genetic disease

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3842213

Transcription of human c-myc in permeabilized nuclei is associated with formation of Z-DNA in three discrete regions of the gene

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3842213

QGRS Mapper: a web-based server for predicting G-quadruplexes in nucleotide sequences

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3842213

Brain regional differences in the expansion of a CAG repeat in the spinocerebellar ataxias: dentatorubral-pallidoluysian atrophy, Machado-Joseph disease, and spinocerebellar ataxia type 1.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3842213

Somatic and gonadal mosaicism of the Huntington disease gene CAG repeat in brain and sperm.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3842213

Gametic and somatic tissue-specific heterogeneity of the expanded SCA1 CAG repeat in spinocerebellar ataxia type 1.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3842213

Comparison of CTG repeat length expansion and clinical progression of myotonic dystrophy over a five year period

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3842213

DNA H form requires a homopurine-homopyrimidine mirror repeat.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3842213

Expansion and deletion of CTG repeats from human disease genes are determined by the direction of replication in E. coli

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3842213

Preferential DNA secondary structure mutagenesis in the lagging strand of replication in E. coli

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3842213

Upregulation of error-prone DNA polymerases beta and kappa slows down fork progression without activating the replication checkpoint.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3842213

Duplications between direct repeats stabilized by DNA secondary structure occur preferentially in the leading strand during DNA replication

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3842213

Analysis of triplet repeat replication by two-dimensional gel electrophoresis.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3842213

DNA helical instability facilitates initiation at the SV40 replication origin

28 November 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2013.08.004

Single strands, triple strands, and kinks in H-DNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2013.08.004

Z-DNA forms without an alternating purine-pyrimidine sequence in solution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2013.08.004

Trinucleotide repeat DNA structures: dynamic mutations from dynamic DNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2013.08.004

Trinucleotide repeats affect DNA replication in vivo

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2013.08.004

Combing genomic DNA for structural and functional studies

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2013.08.004

Progression of somatic CTG repeat length heterogeneity in the blood cells of myotonic dystrophy patients

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2013.08.004

Heterogeneity of DM kinase repeat expansion in different fetal tissues and further expansion during cell proliferation in vitro: evidence for a casual involvement of methyl-directed DNA mismatch repair in triplet repeat stability

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2013.08.004

Expansion and deletion of triplet repeat sequences in Escherichia coli occur on the leading strand of DNA replication

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2013.08.004

Mouse tissue culture models of unstable triplet repeats: in vitro selection for larger alleles, mutational expansion bias and tissue specificity, but no association with cell division rates

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2013.08.004

10.1016/J.YMETH.2013.08.004

7 January 2021

Identifiers

DOI

1 reference

release_hswq4pw7u5bmrheeq5f67tckcq

Fatcat ID

0 references

1 reference

1 reference

PubMed publication ID

23954565

1 reference