Conformational changes of non-B DNA. (Q37928936)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21901191%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

review article

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title

Conformational changes of non-B DNA (English)

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12 February 2020

1

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12 February 2020

author name string

Tetsuro Majima

series ordinal

2

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12 February 2020

publication date

7 September 2011

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21901191%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

published in

Chemical Society Reviews

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21901191%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

volume

40

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12 February 2020

issue

12

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12 February 2020

page(s)

5893-5909

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21901191%20AND%20SRC:MED&resulttype=core&format=json

Molecular Structure of Nucleic Acids: A Structure for Deoxyribose Nucleic Acid

12 February 2020

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Structure of the Hybrid-2 type intramolecular human telomeric G-quadruplex in K+ solution: insights into structure polymorphism of the human telomeric sequence

21 January 2018

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Structure of two intramolecular G-quadruplexes formed by natural human telomere sequences in K+ solution

21 January 2018

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Solution structure of the human telomeric repeat d[AG3(T2AG3)3] G-tetraplex

21 January 2018

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A lead-filled G-quadruplex: insight into the G-Quartet's selectivity for Pb(2+) over K(+)

21 January 2018

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Potassium-lead-switched G-quadruplexes: a new class of DNA logic gates

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Kinetics and mechanism of K+- and Na+-induced folding of models of human telomeric DNA into G-quadruplex structures

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Resolution and characterization of the structural polymorphism of a single quadruplex-forming sequence

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A contractile electronic switch made of DNA.

21 January 2018

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Investigation of spectral conversion of d(TTAGGG)4 and d(TTAGGG)13 upon potassium titration by a G-quadruplex recognizer BMVC molecule

21 January 2018

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Solution structure of a locked nucleic acid modified quadruplex: introducing the V4 folding topology

21 January 2018

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Conformationally rigid nucleoside probes help understand the role of sugar pucker and nucleobase orientation in the thrombin-binding aptamer

21 January 2018

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Destabilization of quadruplex DNA by 8-aminoguanine.

21 January 2018

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8-Amino guanine accelerates tetramolecular G-quadruplex formation.

21 January 2018

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Two-repeat human telomeric d(TAGGGTTAGGGT) sequence forms interconverting parallel and antiparallel G-quadruplexes in solution: distinct topologies, thermodynamic properties, and folding/unfolding kinetics

21 January 2018

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A G-Rich Sequence within the c-kit Oncogene Promoter Forms a Parallel G-Quadruplex Having Asymmetric G-Tetrad Dynamics

21 January 2018

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21 January 2018

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Extreme conformational diversity in human telomeric DNA

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G-quadruplex structures of human telomere DNA examined by single molecule FRET and BrG-substitution

21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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Putative DNA quadruplex formation within the human c-kit oncogene

21 January 2018

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Human telomeric DNA: G-quadruplex, i-motif and Watson-Crick double helix

21 January 2018

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G-quadruplex nucleic acids as therapeutic targets

21 January 2018

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The i-motif in the bcl-2 P1 promoter forms an unexpectedly stable structure with a unique 8:5:7 loop folding pattern

21 January 2018

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Formation of i-motif structure at neutral and slightly alkaline pH.

21 January 2018

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Hydration regulates thermodynamics of G-quadruplex formation under molecular crowding conditions

21 January 2018

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Carboxyl-modified single-walled carbon nanotubes selectively induce human telomeric i-motif formation

21 January 2018

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An intramolecular i-motif: the solution structure and base-pair opening kinetics of d(5mCCT3CCT3ACCT3CC)

21 January 2018

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Solution structure and base pair opening kinetics of the i-motif dimer of d(5mCCTTTACC): a noncanonical structure with possible roles in chromosome stability

21 January 2018

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pH-dependent structures of an i-motif DNA in solution

21 January 2018

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Biophysical characterization of an ensemble of intramolecular i-motifs formed by the human c-MYC NHE III1 P1 promoter mutant sequence

21 January 2018

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Molecular crowding of the cosolutes induces an intramolecular i-motif structure of triplet repeat DNA oligomers at neutral pH.

21 January 2018

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Coexistence of an ILPR i-motif and a partially folded structure with comparable mechanical stability revealed at the single-molecule level.

21 January 2018

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Stability of the I-motif structure is related to the interactions between phosphodiester backbones

21 January 2018

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Intramolecular folding of a fragment of the cytosine-rich strand of telomeric DNA into an i-motif

21 January 2018

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The folding and unfolding kinetics of the i-motif structure formed by the C-rich strand of human telomere DNA.

21 January 2018

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Alternating-electric-field-enhanced reversible switching of DNA nanocontainers with pH.

21 January 2018

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Molecular structure of a left-handed double helical DNA fragment at atomic resolution

21 January 2018

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Generation and detection of Z-DNA.

21 January 2018

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Fluorescence properties of 2-aminopurine-cytidine-7-deazaguanine (5'-ApCdzG-3') trimer in B- and Z-DNA.

21 January 2018

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Phylogenomic analysis of the emergence of GC-rich transcription elements

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Z-DNA-forming silencer in the first exon regulates human ADAM-12 gene expression

21 January 2018

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Z-DNA-binding proteins can act as potent effectors of gene expression in vivo

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A Z-DNA binding domain present in the human editing enzyme, double-stranded RNA adenosine deaminase

21 January 2018

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Crystal structure of the Zalpha domain of the human editing enzyme ADAR1 bound to left-handed Z-DNA

21 January 2018

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Crystal structure of a junction between B-DNA and Z-DNA reveals two extruded bases

21 January 2018

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Sequence-specific B-DNA flexibility modulates Z-DNA formation

21 January 2018

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Salt-induced co-operative conformational change of a synthetic DNA: Equilibrium and kinetic studies with poly(dG-dC)

21 January 2018

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Timeline: Z-DNA: the long road to biological function

21 January 2018

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Biomolecule-based switching devices that respond inversely to thermal stimuli

21 January 2018

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Flipping of cloned d(pCpG)n.d(pCpG)n DNA sequences from right- to left-handed helical structure by salt, Co(III), or negative supercoiling

21 January 2018

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Cellular strategies for regulating DNA supercoiling: a single-molecule perspective

21 January 2018

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Supercoiled DNA and cruciform structures

21 January 2018

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Minute negative superhelicity is sufficient to induce the B-Z transition in the presence of low tension

21 January 2018

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The elasticity of a single supercoiled DNA molecule

21 January 2018

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Energetics of B-to-Z transition in DNA.

21 January 2018

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A method to identify and characterize Z-DNA binding proteins using a linear oligodeoxynucleotide

21 January 2018

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Alzheimer's disease amyloid beta converting left-handed Z-DNA back to right-handed B-form

21 January 2018

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Analysis of the 5' sequence, genomic structure, and alternative splicing of the presenilin-1 gene (PSEN1) associated with early onset Alzheimer disease

21 January 2018

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Synthesis, structure and thermodynamic properties of 8-methylguanine-containing oligonucleotides: Z-DNA under physiological salt conditions

21 January 2018

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The poly dA helix: a new structural motif for high performance DNA-based molecular switches.

21 January 2018

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Molecular recognition of poly(A) targeting by protoberberine alkaloids: in vitro biophysical studies and biological perspectives

21 January 2018

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Molecular recognition of poly(A) by small ligands: an alternative method of analysis reveals nanomolar, cooperative and shape-selective binding

21 January 2018

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Molecular recognition of single-stranded RNA: neomycin binding to poly(A).

21 January 2018

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Self-structure induction in single stranded poly(A) by small molecules: Studies on DNA intercalators, partial intercalators and groove binding molecules

21 January 2018

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Molecular recognition of nucleic acids: coralyne binds strongly to poly(A).

21 January 2018

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Polymorphic Nucleic Acid Binding of Bioactive Isoquinoline Alkaloids and Their Role in Cancer

21 January 2018

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Assembly of an antiparallel homo-adenine DNA duplex by small-molecule binding

21 January 2018

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Molecular dynamics simulations and coupled nucleotide substitution experiments indicate the nature of A⋅A base pairing and a putative structure of the coralyne-induced homo-adenine duplex

21 January 2018

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Controlling nucleic acid secondary structure by intercalation: effects of DNA strand length on coralyne-driven duplex disproportionation

21 January 2018

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Protonated DNA structures

21 January 2018

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Predicting RNA pseudoknot folding thermodynamics

21 January 2018

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A molecular beacon strategy for the thermodynamic characterization of triplex DNA: triplex formation at the promoter region of cyclin D1.

21 January 2018

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Molecular beacons: probes that fluoresce upon hybridization

21 January 2018

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Thermodynamic basis of the enhanced specificity of structured DNA probes

21 January 2018

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Functional nucleic acid sensors

21 January 2018

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Role of the closing base pair for d(GCA) hairpin stability: free energy analysis and folding simulations

21 January 2018

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Kinetics of conformational fluctuations in DNA hairpin-loops

21 January 2018

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DNA folding and melting observed in real time redefine the energy landscape

21 January 2018

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Folding of a DNA hairpin loop structure in explicit solvent using replica-exchange molecular dynamics simulations

21 January 2018

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Multiple routes to characterize the folding of a small DNA hairpin

21 January 2018

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Triplex-forming oligonucleotides: principles and applications

21 January 2018

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Triplex technology in studies of DNA damage, DNA repair, and mutagenesis

21 January 2018

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Triplex DNA: fundamentals, advances, and potential applications for gene therapy

21 January 2018

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Specificity of DNA triple helix formation analyzed by a FRET assay

21 January 2018

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https://api.crossref.org/works/10.1039%2FC1CS15153C

Thermodynamic characterization of the stability and the melting behavior of a DNA triplex: a spectroscopic and calorimetric study

21 January 2018

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Direct measurement of thermodynamic and kinetic parameters of DNA triple helix formation by fluorescence spectroscopy

21 January 2018

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https://api.crossref.org/works/10.1039%2FC1CS15153C

pH and cation effects on the properties of parallel pyrimidine motif DNA triplexes

21 January 2018

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Groove binding ligands for the interaction with parallel-stranded ps-duplex DNA and triplex DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CS15153C

Molecular crowding effects on structure and stability of DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CS15153C

Hydration of Watson-Crick base pairs and dehydration of Hoogsteen base pairs inducing structural polymorphism under molecular crowding conditions.

21 January 2018

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https://api.crossref.org/works/10.1039%2FC1CS15153C

Sequence-selective recognition of DNA by strand displacement with a thymine-substituted polyamide

21 January 2018

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https://api.crossref.org/works/10.1039%2FC1CS15153C

An electrochemically actuated reversible DNA switch.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CS15153C

Stimuli-responsive controlled-release system using quadruplex DNA-capped silica nanocontainers.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CS15153C

Aptamer-based tumor-targeted drug delivery for photodynamic therapy

21 January 2018

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https://api.crossref.org/works/10.1039%2FC1CS15153C

The structures of quadruplex nucleic acids and their drug complexes

21 January 2018

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https://api.crossref.org/works/10.1039%2FC1CS15153C

Antisense-induced guanine quadruplexes inhibit reverse transcription by HIV-1 reverse transcriptase

21 January 2018

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A 6-mer photocontrolled oligonucleotide as an effective telomerase inhibitor.

21 January 2018

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The first derivative of a function of circular dichroism spectra: biophysical study of human telomeric G-quadruplex

21 January 2018

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Bâ Z DNA Transition Triggered by a Cationic Comb-Type Copolymer

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CS15153C

Comb-Type Polycations Effectively Stabilize DNA Triplex

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CS15153C

Stability and Cations Coordination of DNA and RNA 14-Mer G-Quadruplexes: A Multiscale Computational Approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CS15153C

FRET Fluctuation Spectroscopy: Exploring the Conformational Dynamics of a DNA Hairpin Loop

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CS15153C