Control of cell identity genes occurs in insulated neighborhoods in mammalian chromosomes (Q28249527)

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21 February 2020

title

Control of cell identity genes occurs in insulated neighborhoods in mammalian chromosomes (English)

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21 February 2020

3

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21 February 2020

Brian J. Abraham

5

1 reference

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21 February 2020

Richard A. Young

11

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21 February 2020

author name string

Jill M Dowen

1

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21 February 2020

Zi Peng Fan

2

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21 February 2020

Gang Ren

4

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21 February 2020

Lyndon N Zhang

6

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21 February 2020

Abraham S Weintraub

7

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21 February 2020

Tong Ihn Lee

9

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21 February 2020

Keji Zhao

10

1 reference

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21 February 2020

Jurian Schujiers

8

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21 February 2020

language of work or name

English

0 references

publication date

1 October 2014

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21 February 2020

1 reference

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21 February 2020

volume

159

1 reference

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21 February 2020

issue

2

1 reference

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21 February 2020

page(s)

374-387

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CTCF: an architectural protein bridging genome topology and function

21 February 2020

cites work

1 reference

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Disentangling the many layers of eukaryotic transcriptional regulation

20 March 2017

1 reference

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Topological domains in mammalian genomes identified by analysis of chromatin interactions

20 March 2017

1 reference

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Mediator and cohesin connect gene expression and chromatin architecture

20 March 2017

1 reference

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ChIA-PET tool for comprehensive chromatin interaction analysis with paired-end tag sequencing

20 March 2017

1 reference

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CTCF: master weaver of the genome

20 March 2017

1 reference

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Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains

20 March 2017

1 reference

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CTCF physically links cohesin to chromatin

20 March 2017

1 reference

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Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome

20 March 2017

1 reference

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Control of developmental regulators by Polycomb in human embryonic stem cells

20 March 2017

1 reference

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The protein CTCF is required for the enhancer blocking activity of vertebrate insulators

20 March 2017

1 reference

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Super-enhancers in the control of cell identity and disease

20 March 2017

1 reference

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An oestrogen-receptor-α-bound human chromatin interactome

20 March 2017

1 reference

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The Polycomb complex PRC2 and its mark in life

7 April 2017

1 reference

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Polycomb complexes repress developmental regulators in murine embryonic stem cells

7 April 2017

1 reference

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The long-range interaction landscape of gene promoters

7 April 2017

1 reference

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A map of the cis-regulatory sequences in the mouse genome

7 April 2017

1 reference

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Spatial partitioning of the regulatory landscape of the X-inactivation centre

7 April 2017

1 reference

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Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation

7 April 2017

1 reference

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Control of the embryonic stem cell state

7 April 2017

1 reference

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Genome-wide mapping of Polycomb target genes unravels their roles in cell fate transitions

7 April 2017

1 reference

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Master transcription factors and mediator establish super-enhancers at key cell identity genes

7 April 2017

1 reference

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Cohesins functionally associate with CTCF on mammalian chromosome arms

7 April 2017

1 reference

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Cohesin mediates transcriptional insulation by CCCTC-binding factor

7 April 2017

1 reference

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The 3D genome in transcriptional regulation and pluripotency

7 April 2017

1 reference

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Identification of alternative topological domains in chromatin

29 September 2017

1 reference

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A single oncogenic enhancer rearrangement causes concomitant EVI1 and GATA2 deregulation in leukemia

29 September 2017

1 reference

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CTCF and cohesin cooperate to organize the 3D structure of the mammalian genome

29 September 2017

1 reference

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NOTCH1-RBPJ complexes drive target gene expression through dynamic interactions with superenhancers

29 September 2017

1 reference

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Interactome maps of mouse gene regulatory domains reveal basic principles of transcriptional regulation.

29 September 2017

1 reference

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Cohesin and CTCF differentially affect chromatin architecture and gene expression in human cells

29 September 2017

1 reference

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Multiple structural maintenance of chromosome complexes at transcriptional regulatory elements.

29 September 2017

1 reference

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Organization of the mitotic chromosome

29 September 2017

1 reference

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Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments

29 September 2017

1 reference

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The pluripotent genome in three dimensions is shaped around pluripotency factors

29 September 2017

1 reference

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Cohesin and polycomb proteins functionally interact to control transcription at silenced and active genes

29 September 2017

1 reference

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Chromatin insulators: linking genome organization to cellular function

29 September 2017

1 reference

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Architectural protein subclasses shape 3D organization of genomes during lineage commitment

29 September 2017

1 reference

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CTCF and cohesin: linking gene regulatory elements with their targets

29 September 2017

1 reference

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Transcriptional regulation and its misregulation in disease.

29 September 2017

1 reference

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The hierarchy of the 3D genome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197132

Genome organization and long-range regulation of gene expression by enhancers

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197132

Functional implications of genome topology.

29 September 2017

1 reference

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Constitutive nuclear lamina-genome interactions are highly conserved and associated with A/T-rich sequence

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197132

Transcription factors: from enhancer binding to developmental control

29 September 2017

1 reference

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Nature and function of insulator protein binding sites in the Drosophila genome.

29 September 2017

1 reference

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Drosophila CTCF tandemly aligns with other insulator proteins at the borders of H3K27me3 domains

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197132

Chromatin Interaction Analysis with Paired-End Tag Sequencing (ChIA-PET) for mapping chromatin interactions and understanding transcription regulation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197132

Enhancer decommissioning by LSD1 during embryonic stem cell differentiation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197132

Characterization of genome-wide enhancer-promoter interactions reveals co-expression of interacting genes and modes of higher order chromatin organization

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197132

Three-dimensional folding and functional organization principles of the Drosophila genome

29 September 2017

1 reference

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Dynamic chromatin states in human ES cells reveal potential regulatory sequences and genes involved in pluripotency.

29 September 2017

1 reference

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CTCF-mediated functional chromatin interactome in pluripotent cells

29 September 2017

1 reference

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Chromatin connections to pluripotency and cellular reprogramming

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197132

The transcriptional and signalling networks of pluripotency

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197132

Functional analysis of CTCF during mammalian limb development

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197132

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197132

Suz12 binds to silenced regions of the genome in a cell-type-specific manner

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197132

Genome-wide analysis of Polycomb targets in Drosophila melanogaster

29 September 2017

1 reference

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Genome-wide profiling of PRC1 and PRC2 Polycomb chromatin binding in Drosophila melanogaster

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197132

Chromosomal distribution of PcG proteins during Drosophila development

29 September 2017

1 reference

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Chromatin boundaries and chromatin domains.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197132

Transcriptional regulation and the role of diverse coactivators in animal cells

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197132

Cohesin-mediated interactions organize chromosomal domain architecture

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197132

Long-range chromatin contacts in embryonic stem cells reveal a role for pluripotency factors and polycomb proteins in genome organization

2 June 2018

1 reference

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The genomic landscape of cohesin-associated chromatin interactions

2 June 2018

1 reference

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CTCF-binding elements mediate control of V(D)J recombination

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197132

Large histone H3 lysine 9 dimethylated chromatin blocks distinguish differentiated from embryonic stem cells

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197132

Brief report: miR-290-295 regulate embryonic stem cell differentiation propensities by repressing Pax6.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197132

A wt1-controlled chromatin switching mechanism underpins tissue-specific wnt4 activation and repression

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197132

10.1016/J.CELL.2014.09.030

27 November 2018

Identifiers

DOI

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25303531%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25303531%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

PubMed publication ID

25303531

2 references